Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0024842

Physical Location & Seq

Genomic Coordinates Forward (+)

4269962 .. 4273311

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0055600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGAGAAAGACTCAGATTATGGAGCTTTCACAGAGAAATTCCTTCTGCAATCTAGCTCTTCATCTCATGATCTTCCCTTGAGTGGCCTCACCTTTGCTGTCAAAGACATATTTGATATGGCTGGATATGTGACTGGATTTGGAAATCCTGATTGGGCAAGGACTCACCCAGCTGCCGAATCAACAGCTCCTTCTGTTTCTACATTCTTAGAAGGAGGTGCCACATGTATTGGTAGAACTATCATGGATGAAATGGCATACAGTATAAATGGAGAGAACAATCATTATGGTACACCGGTAAATCCATGTGCACCAGATAGGGTGCCTGGAGGATCTTCTAGTGGCTCTGCTGTTGTAGTGGCTGCAGGCCTTGCAGATTTTTCCTTAGGAACTGACAGCGGAGGAAGTGTAAGAGTTCCTGCTTCATATTGTGGAATTTTTGGGTTCCGACCTTCTCATGGTGTCATTTCTACTTCTGGAGTTGTTCCTTTGGCACAAAGTTTTGATACTGTGGGATGGTTTGCTAGGGATCCTGTGGTTTTTAGTAGAGTAGGACGGTCATTACTGCAAATTCCTGATGCACATCCTGTCAGACCAGCTCAATTGATCATTGCTGAAGACTGTTTCCAGCTTTCAAGCATTCCAAGTGATCGAGTAAAACAAGGACTTGTTCACTCAGTTGAGAAGTTATTTGGGGGTCATGTTTTAAAGCATGCAAACCTTGGGGATGTTGTGAAGGACAAAGTTCCAAGTTTGAACTGTTTCTTTGAGAAAGGAAATACAAGTCAAGAGGATAACATACCATCCTTGGCAGCCCTATCAAGTGCCATGCGAACACTCGAAAGGCATGAATTCAAGAACAACCATGGTGAATGGGTCATGACTGTCAGGCCTGATATAGGTCCTGCGGACCGGATAAATGAACGTGTATGGGAAGCCGTCAGGGCAGCAGATGAAAATATTGATATTTGTTACTCCGTGAAGACCGAACTATGTGCTGCTCTTACTGAACTTCTTGGGGATGCTGGTGTCCTTGCGATTCCTACAGTTCCAGGGCTTCCACCAAAACTACATACGGATCCTACTACACTTGAAGCATATCGCCACAGGGCTTTTAGCTTTTTGTCCATTGCCGTAGTATCTGGATTCTGCCAGGTGGTCATACCACTAGGCATGTACGAAGGCCTACCTGTGTCGGTTTCCTTGCTGGCAAAGCACGGCTCAGATGGATTCCTGCTCAGTCTTGTGGAGACTCTCTATGCCACTCTCAAAGAACAAGTTGAAAGCTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

431

Amino Acids

46.08

Weight (kDa)

5.29

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidase	PF01425	21 - 177	1.3e-51	Amidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024842)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0115581
rosa_rugosa	Rorug03G0055600
rosa_samantha	Rh2CG260900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	218, 322
AciI	CCGC	2 cut(s)	399, 908
AclWI	GGATC	5 cut(s)	340, 524, 537, 1073, 1086
AcsI	RAATTY	4 cut(s)	38, 435, 570, 851
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	2 cut(s)	292, 1178
AfiI	CCNNNNNNNGG	3 cut(s)	83, 458, 899
AflIII	ACRYGT	2 cut(s)	224, 925
AgeI	ACCGGT	1 cut(s)	295
AgsI	TTSAA	6 cut(s)	636, 757, 856, 1094, 1283, 1291
AjnI	CCWGG	3 cut(s)	325, 1051, 1152
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
AluBI	AGCT	8 cut(s)	26, 57, 173, 188, 599, 631, 1119, 1287
AluI	AGCT	8 cut(s)	26, 57, 173, 188, 599, 631, 1119, 1287
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	1244
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	5 cut(s)	340, 524, 537, 1073, 1086
AoxI	GGCC	4 cut(s)	85, 367, 890, 1183
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	5 cut(s)	173, 362, 812, 947, 998
ApoI	RAATTY	4 cut(s)	38, 435, 570, 851
AsiGI	ACCGGT	1 cut(s)	295
Asp700I	GAANNNNTTC	1 cut(s)	761
AspS9I	GGNCC	2 cut(s)	902, 910
AsuHPI	GGTGA	3 cut(s)	82, 158, 881
AvaII	GGWCC	2 cut(s)	902, 910
AxyI	CCTNAGG	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	313
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BamHI	GGATCC	2 cut(s)	529, 1078
BanI	GGYRCC	2 cut(s)	218, 322
BbsI	GAAGAC	2 cut(s)	624, 989
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	5 cut(s)	160, 349, 824, 959, 985
BccI	CCATC	3 cut(s)	510, 811, 1220
BceAI	ACGGC	3 cut(s)	923, 1118, 1234
BcgI	CGANNNNNNTGC	2 cut(s)	977, 1011
BciT130I	CCWGG	3 cut(s)	327, 1053, 1154
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	1244
BfaI	CTAG	4 cut(s)	54, 339, 525, 1169
BfmI	CTRYAG	2 cut(s)	363, 1044
BglI	GCCNNNNNGGC	1 cut(s)	944
BisI	GCNGC	5 cut(s)	174, 363, 813, 948, 999
BlsI	GCNGC	5 cut(s)	175, 364, 814, 949, 1000
Bme1390I	CCNGG	3 cut(s)	327, 1053, 1154
Bme18I	GGWCC	2 cut(s)	902, 910
BmgT120I	GGNCC	2 cut(s)	902, 910
BmiI	GGNNCC	5 cut(s)	220, 324, 446, 531, 1080
BmrFI	CCNGG	3 cut(s)	327, 1053, 1154
BmsI	GCATC	2 cut(s)	568, 1012
BpiI	GAAGAC	2 cut(s)	624, 989
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	2 cut(s)	348, 498
BpuEI	CTTGAG	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	4 cut(s)	721, 807, 865, 1052
BsaWI	WCCGGW	2 cut(s)	295, 912
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 458, 899
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	385
Bse3DI	GCAATG	2 cut(s)	609, 1128
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	327, 1053, 1154
BseDI	CCNNGG	4 cut(s)	721, 807, 865, 1052
BseGI	GGATG	6 cut(s)	253, 521, 583, 733, 803, 1027
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	83, 458, 899
BseMI	GCAATG	2 cut(s)	609, 1128
BseMII	CTCAG	4 cut(s)	27, 690, 1236, 1252
BseNI	ACTGG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	5 cut(s)	160, 349, 824, 959, 985
BseYI	CCCAGC	1 cut(s)	169
BshFI	GGCC	4 cut(s)	87, 369, 892, 1185
BshNI	GGYRCC	2 cut(s)	218, 322
BshTI	ACCGGT	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	296, 913
BslI	CCNNNNNNNGG	3 cut(s)	83, 458, 899
BsmAI	GTCTC	1 cut(s)	1244
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	4 cut(s)	87, 369, 892, 1185
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	6 cut(s)	70, 332, 529, 606, 649, 1078
Bsp19I	CCATGG	1 cut(s)	865
BspACI	CCGC	2 cut(s)	399, 908
BspANI	GGCC	4 cut(s)	87, 369, 892, 1185
BspCNI	CTCAG	4 cut(s)	26, 689, 1235, 1251
BspHI	TCATGA	2 cut(s)	67, 879
BspLI	GGNNCC	5 cut(s)	220, 324, 446, 531, 1080
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	5 cut(s)	340, 524, 537, 1073, 1086
BspQI	GCTCTTC	1 cut(s)	64
BspT107I	GGYRCC	2 cut(s)	218, 322
BsrDI	GCAATG	2 cut(s)	609, 1128
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	4 cut(s)	721, 807, 865, 1052
BssMI	GATC	6 cut(s)	70, 332, 529, 606, 649, 1078
BssT1I	CCWWGG	3 cut(s)	721, 807, 865
Bst2UI	CCWGG	3 cut(s)	327, 1053, 1154
Bst4CI	ACNGT	7 cut(s)	263, 511, 558, 623, 761, 886, 1048
Bst6I	CTCTTC	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	367, 714, 1209
BstDEI	CTNAG	6 cut(s)	13, 208, 385, 676, 1222, 1238
BstDSI	CCRYGG	1 cut(s)	865
BstENI	CCTNNNNNAGG	1 cut(s)	897
BstF5I	GGATG	6 cut(s)	253, 521, 583, 733, 803, 1027
BstKTI	GATC	6 cut(s)	73, 335, 532, 609, 652, 1081
BstMAI	GTCTC	1 cut(s)	1244
BstMBI	GATC	6 cut(s)	70, 332, 529, 606, 649, 1078
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 944, 1213
BstNI	CCWGG	3 cut(s)	327, 1053, 1154
BstNSI	RCATGY	3 cut(s)	228, 716, 1177
BstSCI	CCNGG	3 cut(s)	325, 1051, 1152
BstSFI	CTRYAG	2 cut(s)	363, 1044
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	5 cut(s)	160, 349, 824, 959, 985
BstV2I	GAAGAC	2 cut(s)	624, 989
BstX2I	RGATCY	3 cut(s)	332, 529, 1078
BstYI	RGATCY	3 cut(s)	332, 529, 1078
Bsu36I	CCTNAGG	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	87, 369, 892, 1185
BtgI	CCRYGG	1 cut(s)	865
BtsCI	GGATG	6 cut(s)	253, 521, 583, 733, 803, 1027
Cac8I	GCNNGC	3 cut(s)	367, 714, 1209
CciI	TCATGA	2 cut(s)	67, 879
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	902, 910
CpoI	CGGWCCG	1 cut(s)	910
Csp6I	GTAC	2 cut(s)	291, 1177
CspAI	ACCGGT	1 cut(s)	295
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CspI	CGGWCCG	1 cut(s)	910
CviQI	GTAC	2 cut(s)	291, 1177
DdeI	CTNAG	6 cut(s)	13, 208, 385, 676, 1222, 1238
DpnI	GATC	6 cut(s)	72, 334, 531, 608, 651, 1080
DpnII	GATC	6 cut(s)	70, 332, 529, 606, 649, 1078
DraI	TTTAAA	1 cut(s)	708
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	721, 807, 865
Eco147I	AGGCCT	3 cut(s)	369, 892, 1185
Eco47I	GGWCC	2 cut(s)	902, 910
Eco57I	CTGAAG	1 cut(s)	636
Eco81I	CCTNAGG	1 cut(s)	385
EcoNI	CCTNNNNNAGG	1 cut(s)	897
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRI	GAATTC	1 cut(s)	851
EcoRII	CCWGG	3 cut(s)	325, 1051, 1152
EcoT14I	CCWWGG	3 cut(s)	721, 807, 865
ErhI	CCWWGG	3 cut(s)	721, 807, 865
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	5 cut(s)	174, 363, 813, 948, 999
FokI	GGATG	6 cut(s)	260, 528, 570, 740, 790, 1034
Fsp4HI	GCNGC	5 cut(s)	174, 363, 813, 948, 999
FspBI	CTAG	4 cut(s)	54, 339, 525, 1169
GluI	GCNGC	5 cut(s)	174, 363, 813, 948, 999
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	2 cut(s)	348, 498
HaeIII	GGCC	4 cut(s)	87, 369, 892, 1185
HapII	CCGG	2 cut(s)	296, 913
HindIII	AAGCTT	1 cut(s)	1285
HinfI	GANTC	7 cut(s)	11, 163, 179, 1039, 1146, 1230, 1252
HpaII	CCGG	2 cut(s)	296, 913
HphI	GGTGA	3 cut(s)	82, 158, 881
Hpy166II	GTNNAC	3 cut(s)	293, 311, 673
Hpy188I	TCNGA	4 cut(s)	16, 449, 593, 1225
Hpy188III	TCNNGA	8 cut(s)	68, 149, 477, 575, 788, 856, 880, 1143
Hpy8I	GTNNAC	3 cut(s)	293, 311, 673
HpyAV	CCTTC	6 cut(s)	53, 201, 206, 462, 730, 1175
HpyCH4III	ACNGT	7 cut(s)	263, 511, 558, 623, 761, 886, 1048
HpyCH4IV	ACGT	1 cut(s)	925
HpyCH4V	TGCA	7 cut(s)	49, 311, 365, 374, 568, 581, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 944, 1213
HpyF3I	CTNAG	6 cut(s)	13, 208, 385, 676, 1222, 1238
HpySE526I	ACGT	1 cut(s)	925
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	6 cut(s)	70, 332, 529, 606, 649, 1078
LguI	GCTCTTC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	23, 193
Lsp1109I	GCAGC	5 cut(s)	160, 349, 824, 959, 985
LweI	GCATC	2 cut(s)	568, 1012
MaeI	CTAG	4 cut(s)	54, 339, 525, 1169
MaeII	ACGT	1 cut(s)	925
MaeIII	GTNAC	2 cut(s)	130, 971
MalI	GATC	6 cut(s)	72, 334, 531, 608, 651, 1080
MboI	GATC	6 cut(s)	70, 332, 529, 606, 649, 1078
MboII	GAAGA	5 cut(s)	51, 65, 327, 629, 994
MfeI	CAATTG	1 cut(s)	602
MflI	RGATCY	3 cut(s)	332, 529, 1078
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	5 cut(s)	38, 435, 570, 602, 851
MlyI	GAGTC	3 cut(s)	5, 157, 1246
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	5 cut(s)	98, 209, 323, 395, 784
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	1 cut(s)	707
MspA1I	CMGCKG	2 cut(s)	173, 399
MspI	CCGG	2 cut(s)	296, 913
MspR9I	CCNGG	3 cut(s)	327, 1053, 1154
MunI	CAATTG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	3 cut(s)	327, 1053, 1154
MwoI	GCNNNNNNNGC	3 cut(s)	371, 944, 1213
NcoI	CCATGG	1 cut(s)	865
NdeII	GATC	6 cut(s)	70, 332, 529, 606, 649, 1078
NlaIV	GGNNCC	5 cut(s)	220, 324, 446, 531, 1080
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	3 cut(s)	228, 716, 1177
PaeI	GCATGC	1 cut(s)	716
PagI	TCATGA	2 cut(s)	67, 879
PceI	AGGCCT	3 cut(s)	369, 892, 1185
PciI	ACATGT	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	4 cut(s)	179, 1039, 1146, 1230
PinAI	ACCGGT	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	175, 364, 814, 949, 1000
PleI	GAGTC	3 cut(s)	5, 157, 1246
PpsI	GAGTC	3 cut(s)	5, 157, 1246
PpuMI	RGGWCCY	1 cut(s)	902
PscI	ACATGT	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	3 cut(s)	325, 1051, 1152
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	3 cut(s)	325, 1051, 1152
PspN4I	GGNNCC	5 cut(s)	220, 324, 446, 531, 1080
PspPI	GGNCC	2 cut(s)	902, 910
PspPPI	RGGWCCY	1 cut(s)	902
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	3 cut(s)	332, 529, 1078
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	292, 1178
RsaNI	GTAC	2 cut(s)	291, 1177
Rsr2I	CGGWCCG	1 cut(s)	910
RsrII	CGGWCCG	1 cut(s)	910
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	5 cut(s)	174, 363, 813, 948, 999
Sau3AI	GATC	6 cut(s)	70, 332, 529, 606, 649, 1078
Sau96I	GGNCC	2 cut(s)	902, 910
SchI	GAGTC	3 cut(s)	5, 157, 1246
ScrFI	CCNGG	3 cut(s)	327, 1053, 1154
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	568, 1012
SfcI	CTRYAG	2 cut(s)	363, 1044
SinI	GGWCC	2 cut(s)	902, 910
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	5 cut(s)	38, 435, 570, 602, 851
SseBI	AGGCCT	3 cut(s)	369, 892, 1185
SsiI	CCGC	2 cut(s)	399, 908
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	4 cut(s)	54, 339, 525, 1169
StuI	AGGCCT	3 cut(s)	369, 892, 1185
StyD4I	CCNGG	3 cut(s)	325, 1051, 1152
StyI	CCWWGG	3 cut(s)	721, 807, 865
TaaI	ACNGT	7 cut(s)	263, 511, 558, 623, 761, 886, 1048
TaiI	ACGT	1 cut(s)	928
TaqI	TCGA	2 cut(s)	652, 840
TaqII	GACCGA	1 cut(s)	1001
TasI	AATT	5 cut(s)	38, 435, 570, 602, 851
TfiI	GAWTC	4 cut(s)	179, 1039, 1146, 1230
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	5 cut(s)	173, 362, 812, 947, 998
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	6 cut(s)	51, 264, 414, 864, 936, 969
TspGWI	ACGGA	2 cut(s)	967, 1091
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	902, 910
XagI	CCTNNNNNAGG	1 cut(s)	897
XapI	RAATTY	4 cut(s)	38, 435, 570, 851
XceI	RCATGY	3 cut(s)	228, 716, 1177
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	4 cut(s)	54, 339, 525, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.