Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0024842

Physical Location & Seq

Genomic Coordinates Forward (+)

27978504 .. 27979301

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG260900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTGGGTTCTCTTTGAATTGCTTGAATACCACCTGCTCACTTTTGTTGCGCACCTCTTGATTGTTGTTCTTCTTGTGGTTCAATGCTTTAAATTCATTAACAAGTCTCCACCCAAGATTCCAGATATTCAAATTCCAGAGAAGCCGTTTCTACAGATTGTCTCTACAATTACATTTGAAATCAACCAGGATTTTGTTGTCATCAGGGATATAGCTTCAGGGAAGGATTTACAGCAGTTCCTCTCAGGGATATTAATCTGGATTGGAATATATGCAACCCACGAAAATGATAGAGATGGAGAACAAGTGAAGGAGAAGCTGCATTTTGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

111

Amino Acids

12.89

Weight (kDa)

5.73

Isoelectric Point (pI)

24.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	1 - 86	3.3e-16	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024842)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0115581
rosa_rugosa	Rorug03G0055600
rosa_samantha	Rh2CG260900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	42
Acc16I	TGCGCA	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	92, 132
AcuI	CTGAAG	1 cut(s)	201
AgsI	TTSAA	5 cut(s)	17, 26, 83, 131, 179
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	215, 319
AluI	AGCT	2 cut(s)	215, 319
Alw26I	GTCTC	2 cut(s)	111, 166
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	2 cut(s)	92, 132
AseI	ATTAAT	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	111, 166
BfmI	CTRYAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	188
BseJI	GATNNNNATC	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	111, 166
BspCNI	CTCAG	1 cut(s)	257
BspMI	ACCTGC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	52
BstMAI	GTCTC	2 cut(s)	111, 166
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	52
CviJI	RGCY	3 cut(s)	145, 215, 319
CviKI_1	RGCY	3 cut(s)	145, 215, 319
DdeI	CTNAG	1 cut(s)	244
DraI	TTTAAA	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	186
FaiI	YATR	3 cut(s)	212, 271, 273
Fnu4HI	GCNGC	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	320
FspI	TGCGCA	1 cut(s)	51
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	118
Hpy188III	TCNNGA	4 cut(s)	58, 122, 137, 259
HpyAV	CCTTC	2 cut(s)	217, 304
HpyCH4V	TGCA	2 cut(s)	275, 322
HpyF3I	CTNAG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	50
LpnPI	CCDG	9 cut(s)	47, 135, 150, 173, 190, 200, 204, 231, 244
Lsp1109I	GCAGC	1 cut(s)	306
MboII	GAAGA	1 cut(s)	62
MluCI	AATT	4 cut(s)	17, 92, 132, 168
MnlI	CCTC	2 cut(s)	65, 251
MseI	TTAA	3 cut(s)	90, 99, 254
MslI	CAYNNNNRTG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
NsbI	TGCGCA	1 cut(s)	51
PaqCI	CACCTGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	321
PshBI	ATTAAT	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	90, 99, 254
SatI	GCNGC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	4 cut(s)	36, 57, 217, 321
SfcI	CTRYAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	4 cut(s)	17, 92, 132, 168
StyD4I	CCNGG	1 cut(s)	186
TasI	AATT	4 cut(s)	17, 92, 132, 168
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	90, 99, 254
Tru9I	TTAA	3 cut(s)	90, 99, 254
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	254
XapI	RAATTY	2 cut(s)	92, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.