Rorug03G0067200

BAHD acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014080
Physical Location & Seq
Reverse (-)
4985245 .. 4987422
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0067200.1

Sequence Viewer

Length: 294 bp
ATGTCGGAACCTAAGACCAAGATCGAATCCCTAAGAGAATGGGTGGTCGAGCATAAGCTCCGAGCTGTTGGGACTCTTTGGCTTACTGGAATAGCCGGTTCGGTAGCTTACAACTGGTCAAGTCCCAAGAAATTTCAAGTGAAGATGATTCATGCCAGGTTGAATGCACAGGCTATCACGCTGGCTGCATTATTTGGTAGCGCTGTTGTTGAATACTATGACCATAAAACTGGTAAAAAGGCTGACAAATACGCCAAGTACATGCACATTGAGAACTTCCAAAGCAAGGATTAA

Protein Analysis

97

Amino Acids

11.06

Weight (kDa)

9.62

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 17 - 66 4.5e-11 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01210
fragaria_vesca FvH4_6g11940
malus_domestica MD04G1147900.v1.1 MD12G1161300.v1.1
prunus_persica Prupe.6G271700_v2.0.a1
pyrus_communis pycom04g13370 pycom12g15300
rosa_chinensis RchiOBHm_Chr3g0463721
rosa_laevigata RLG00000024761
rosa_multiflora Rmu_sc0003267.1_g000035
rosa_roxburghii Rroxscaffold_6G00416350
rosa_rugosa Rorug03G0067200
rosa_samantha Rh3AG124200 Rh3BG128800 Rh3CG131000 Rh3DG129500
rosa_wichuraiana Rw3G010510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 260
AfeI AGCGCT 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 3 cut(s) 137, 163, 212
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 3 cut(s) 58, 65, 107
AluI AGCT 3 cut(s) 58, 65, 107
Aor51HI AGCGCT 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 3 cut(s) 91, 119, 235
BseBI CCWGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 286
BseNI ACTGG 3 cut(s) 91, 119, 235
BseXI GCAGC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 2 cut(s) 85, 108
BslI CCNNNNNNNGG 1 cut(s) 286
BsmFI GGGAC 2 cut(s) 85, 108
BsmI GAATGC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 3 cut(s) 91, 119, 235
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 12, 32
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 95
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 152, 262
CviJI RGCY 8 cut(s) 58, 65, 82, 95, 107, 173, 185, 242
CviKI_1 RGCY 8 cut(s) 58, 65, 82, 95, 107, 173, 185, 242
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 12, 32
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco47III AGCGCT 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 155
FaeI CATG 2 cut(s) 155, 265
FaiI YATR 5 cut(s) 54, 153, 219, 225, 263
FaqI GGGAC 2 cut(s) 85, 108
FatI CATG 2 cut(s) 151, 261
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
GlaI GCGC 1 cut(s) 202
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 204
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 155, 265
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 3 cut(s) 26, 73, 148
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 2 cut(s) 7, 62
HpyCH4V TGCA 3 cut(s) 167, 188, 265
HpyF3I CTNAG 2 cut(s) 12, 32
Hsp92II CATG 2 cut(s) 155, 265
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 8 cut(s) 72, 100, 109, 142, 155, 167, 169, 216
Lsp1109I GCAGC 1 cut(s) 172
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 154
MluCI AATT 1 cut(s) 131
MlyI GAGTC 1 cut(s) 67
MseI TTAA 1 cut(s) 292
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 157
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 155, 265
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 265
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 2 cut(s) 26, 148
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 21
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 157
SetI ASST 5 cut(s) 13, 60, 67, 109, 161
Sse9I AATT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 155
TaqI TCGA 2 cut(s) 24, 48
TasI AATT 1 cut(s) 131
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 26, 148
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 140
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.