Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014080

Physical Location & Seq

Genomic Coordinates Reverse (-)

11059874 .. 11062254

Gene Structure 2381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG129500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGCCTTCATCTTCTTCTTCTGTGACTGTGGTTTCAAAATGCACAGTTTATCCCAACCAAAAATCCACAATCAAATCCCTCAAGCTTTCGGTCTCAGACCTTCCCATGCTCTCCTGCCATTACATTCAGAAGGGAGTTCTGTTTAATTCCCCACCTTACTCCATCAACGACCTTGTCAATTCTCTCAAGCAATCTCTCTCCGTTGCCCTGACTCACTTCCCGGCTCTCGCCGGCCGTTTCCAGACGGACTCCGACGGGTACGTCCACATCCTCTGCAACAACGCCGGCGCCGATTTCATCCAGGCCAAGGCCAAACACCTAACCGTCGACGGCGTTCTGCCTCCTAATTGCGACGTCCCTCATTGCTTCAAAGAGTTCTTCACCTTGGACAGGACCATTAGCTACTCCGGCCACGACAAGCCTTTGGCGGCCGTACAGGTCACCGAGCTCGCCGACGGCGTCTTCATCGGCTGCACTGTCAACCACTCCGTCACCGACGGGACCTCCTTCTGGCATTTCTTCAACACCTTCGCCGAAATAAACAGAGGCGCCCTGAAAATCTCCAAGTCGCCGGACTTCTCCCGCGACACCGTCTTCAACTCTTCGGCGGTGCTTCGTGTCCCTGAAGGCGGCCCTAAGGTCACCTTCTCCGGCAACGAGCCGTTAAGAGAGAGAATTTTCCACTTCACTAGAGAATCAATTCTGAAACTGAAATTCAGGGCCAATAACAACGCCGCCCGTAACGGCTTCTCCGAATCCGCCGAGATTTTCGGGAAGGCACGCAACGACACCTGGGATCCCGCTTCCCGAGACAACAACGGCTCTGCCAAAGCAAGAACGGAAATCTCGTCCTTCCAGTCGCTGAGCGCGCAGCTCTGGCGCTCGGTGACACGTGCCAGGAGCTTAGACCGGTCCAAACCGACGACGTTTCGGATGGCGGTGAATTGCCGCCACAGGCTGGAGCCGAAGATGGACTCGCACTACTTCGGGAACGCGATTCAGAGCATCCCGACCATCGCCACCGTCGGCGATCTCCTATCTCATGACCTGCGGTGGGGGGCTGATCTGCTGCACAAGAACGTGGTGGCGCACGACAGCGACACGGTGCGCCGCGGCGTAGAGGATTGGGAGAGGGCACCGAGGTTGTTCCCGCTGGGGAACTTCGACGGTGCTTCAATGACGATGGGGAGCTCGCCGAGATTTCCGATGTACAACAATGACTTCGGATGGGGGCTGCCCTTGGCCGTAAGGAGCGGTAGGGCTAATAAGTTCGACGGTAAGATATCGGCGTTTCCGGGACGAGAGGGGAACGGAAGTGTTGATCTCGAGGTGGTTTTGGCGCCGGAGACGATGGCGGGGCTGGAGTGCGATGAGGAGTTCATGCAGTACGTAACTGTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

467

Amino Acids

51.54

Weight (kDa)

8.35

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	7 - 460	4.5e-102	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01210
fragaria_vesca	FvH4_6g11940
malus_domestica	MD04G1147900.v1.1 MD12G1161300.v1.1
prunus_persica	Prupe.6G271700_v2.0.a1
pyrus_communis	pycom04g13370 pycom12g15300
rosa_chinensis	RchiOBHm_Chr3g0463721
rosa_laevigata	RLG00000024761
rosa_multiflora	Rmu_sc0003267.1_g000035
rosa_roxburghii	Rroxscaffold_6G00416350
rosa_rugosa	Rorug03G0067200
rosa_samantha	Rh3AG124200 Rh3BG128800 Rh3CG131000 Rh3DG129500
rosa_wichuraiana	Rw3G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AatII	GACGTC	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	1056
AccB1I	GGYRCC	4 cut(s)	287, 548, 1135, 1339
AccB7I	CCANNNNNTGG	1 cut(s)	958
AccBSI	CCGCTC	1 cut(s)	1254
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	4 cut(s)	585, 869, 995, 1113
AclWI	GGATC	2 cut(s)	791, 804
AcoI	YGGCCR	4 cut(s)	232, 409, 429, 1242
AcsI	RAATTY	2 cut(s)	675, 713
AcuI	CTGAAG	1 cut(s)	645
AcvI	CACGTG	1 cut(s)	893
AcyI	GRCGYC	5 cut(s)	288, 354, 459, 549, 1340
AfaI	GTAC	4 cut(s)	260, 435, 1211, 1388
AfiI	CCNNNNNNNGG	6 cut(s)	307, 390, 510, 629, 958, 1054
AflIII	ACRYGT	1 cut(s)	890
AgeI	ACCGGT	1 cut(s)	909
AgsI	TTSAA	5 cut(s)	36, 370, 523, 598, 1176
AjnI	CCWGG	3 cut(s)	300, 791, 896
AluBI	AGCT	6 cut(s)	85, 402, 448, 874, 903, 1191
AluI	AGCT	6 cut(s)	85, 402, 448, 874, 903, 1191
Alw21I	GWGCWC	2 cut(s)	450, 1193
Alw26I	GTCTC	3 cut(s)	97, 804, 1340
AlwI	GGATC	2 cut(s)	791, 804
AlwNI	CAGNNNCTG	1 cut(s)	862
Ama87I	CYCGRG	2 cut(s)	807, 1325
AoxI	GGCC	8 cut(s)	232, 303, 309, 409, 429, 631, 720, 1242
ApeKI	GCWGC	4 cut(s)	471, 871, 1069, 1234
ApoI	RAATTY	2 cut(s)	675, 713
AsiGI	ACCGGT	1 cut(s)	909
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	8 cut(s)	290, 551, 869, 871, 882, 1090, 1110, 1342
AspS9I	GGNCC	5 cut(s)	393, 501, 632, 720, 912
AsuC2I	CCSGG	2 cut(s)	221, 1296
AsuHPI	GGTGA	6 cut(s)	373, 433, 484, 634, 898, 952
AvaI	CYCGRG	2 cut(s)	807, 1325
AvaII	GGWCC	3 cut(s)	393, 501, 912
AxyI	CCTNAGG	1 cut(s)	636
BaeGI	GKGCMC	1 cut(s)	1138
BamHI	GGATCC	1 cut(s)	796
BanI	GGYRCC	4 cut(s)	287, 548, 1135, 1339
BanII	GRGCYC	2 cut(s)	450, 1193
BbrPI	CACGTG	1 cut(s)	893
BbsI	GAAGAC	2 cut(s)	454, 586
Bbv12I	GWGCWC	2 cut(s)	450, 1193
BbvI	GCAGC	4 cut(s)	458, 883, 1056, 1221
BccI	CCATC	7 cut(s)	170, 928, 964, 1022, 1177, 1221, 1345
BceAI	ACGGC	8 cut(s)	219, 346, 416, 472, 646, 760, 835, 1229
BciT130I	CCWGG	3 cut(s)	302, 793, 898
BcnI	CCSGG	2 cut(s)	221, 1296
BcoDI	GTCTC	3 cut(s)	97, 804, 1340
BfaI	CTAG	1 cut(s)	690
BfoI	RGCGCY	4 cut(s)	291, 552, 883, 1343
BfuAI	ACCTGC	1 cut(s)	1056
BlpI	GCTNAGC	1 cut(s)	863
Bme1390I	CCNGG	5 cut(s)	221, 302, 793, 898, 1296
Bme18I	GGWCC	3 cut(s)	393, 501, 912
BmeT110I	CYCGRG	2 cut(s)	807, 1325
BmgT120I	GGNCC	5 cut(s)	393, 501, 632, 720, 912
BmiI	GGNNCC	7 cut(s)	289, 502, 550, 798, 963, 1137, 1341
BmrFI	CCNGG	5 cut(s)	221, 302, 793, 898, 1296
BmsI	GCATC	1 cut(s)	1014
BpiI	GAAGAC	2 cut(s)	454, 586
BpmI	CTGGAG	2 cut(s)	980, 1382
Bpu1102I	GCTNAGC	1 cut(s)	863
BpuEI	CTTGAG	2 cut(s)	65, 170
BpuMI	CCSGG	2 cut(s)	221, 1296
BsaAI	YACGTR	2 cut(s)	893, 1390
BsaHI	GRCGYC	5 cut(s)	288, 354, 459, 549, 1340
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	6 cut(s)	306, 384, 792, 1111, 1139, 1239
BsaWI	WCCGGW	1 cut(s)	909
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 734, 764
Bsc4I	CCNNNNNNNGG	6 cut(s)	307, 390, 510, 629, 958, 1054
Bse118I	RCCGGY	3 cut(s)	230, 284, 909
Bse1I	ACTGG	1 cut(s)	856
Bse21I	CCTNAGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	3 cut(s)	302, 793, 898
BseDI	CCNNGG	6 cut(s)	306, 384, 792, 1111, 1139, 1239
BseGI	GGATG	5 cut(s)	267, 297, 939, 1005, 1232
BseLI	CCNNNNNNNGG	6 cut(s)	307, 390, 510, 629, 958, 1054
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	108, 854
BseNI	ACTGG	1 cut(s)	856
BsePI	GCGCGC	1 cut(s)	867
BseRI	GAGGAG	1 cut(s)	1388
BseSI	GKGCMC	1 cut(s)	1138
BseX3I	CGGCCG	2 cut(s)	232, 429
BseXI	GCAGC	4 cut(s)	458, 883, 1056, 1221
BseYI	CCCAGC	1 cut(s)	1153
BsgI	GTGCAG	2 cut(s)	457, 1055
Bsh1236I	CGCG	4 cut(s)	585, 869, 995, 1113
Bsh1285I	CGRYCG	2 cut(s)	235, 432
BshFI	GGCC	8 cut(s)	234, 305, 311, 411, 431, 633, 722, 1244
BshNI	GGYRCC	4 cut(s)	287, 548, 1135, 1339
BshTI	ACCGGT	1 cut(s)	909
BsiEI	CGRYCG	2 cut(s)	235, 432
BsiHKAI	GWGCWC	2 cut(s)	450, 1193
BsiHKCI	CYCGRG	2 cut(s)	807, 1325
BsiSI	CCGG	9 cut(s)	221, 231, 285, 408, 572, 651, 910, 1295, 1343
BslFI	GGGAC	4 cut(s)	341, 514, 605, 1311
BslI	CCNNNNNNNGG	6 cut(s)	307, 390, 510, 629, 958, 1054
BsmAI	GTCTC	3 cut(s)	97, 804, 1340
BsmBI	CGTCTC	1 cut(s)	1340
BsmFI	GGGAC	4 cut(s)	341, 514, 605, 1311
BsnI	GGCC	8 cut(s)	234, 305, 311, 411, 431, 633, 722, 1244
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	2 cut(s)	807, 1325
Bsp1286I	GDGCHC	3 cut(s)	450, 1138, 1193
Bsp1407I	TGTACA	1 cut(s)	1209
Bsp143I	GATC	4 cut(s)	796, 1030, 1063, 1321
Bsp1720I	GCTNAGC	1 cut(s)	863
BspANI	GGCC	8 cut(s)	234, 305, 311, 411, 431, 633, 722, 1244
BspCNI	CTCAG	2 cut(s)	107, 855
BspFNI	CGCG	4 cut(s)	585, 869, 995, 1113
BspHI	TCATGA	1 cut(s)	1042
BspLI	GGNNCC	7 cut(s)	289, 502, 550, 798, 963, 1137, 1341
BspMI	ACCTGC	1 cut(s)	1056
BspPI	GGATC	2 cut(s)	791, 804
BspT107I	GGYRCC	4 cut(s)	287, 548, 1135, 1339
BspTNI	GGTCTC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	1254
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	3 cut(s)	230, 284, 909
BsrGI	TGTACA	1 cut(s)	1209
BsrI	ACTGG	1 cut(s)	856
BssAI	RCCGGY	3 cut(s)	230, 284, 909
BssECI	CCNNGG	6 cut(s)	306, 384, 792, 1111, 1139, 1239
BssHII	GCGCGC	1 cut(s)	867
BssMI	GATC	4 cut(s)	796, 1030, 1063, 1321
BssNI	GRCGYC	5 cut(s)	288, 354, 459, 549, 1340
BssT1I	CCWWGG	3 cut(s)	306, 384, 1239
Bst2UI	CCWGG	3 cut(s)	302, 793, 898
Bst6I	CTCTTC	1 cut(s)	607
BstACI	GRCGYC	5 cut(s)	288, 354, 459, 549, 1340
BstAUI	TGTACA	1 cut(s)	1209
BstBAI	YACGTR	2 cut(s)	893, 1390
BstC8I	GCNNGC	6 cut(s)	232, 286, 450, 781, 869, 1193
BstDEI	CTNAG	4 cut(s)	94, 636, 863, 904
BstDSI	CCRYGG	1 cut(s)	1111
BstEII	GGTNACC	2 cut(s)	439, 640
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	5 cut(s)	267, 297, 939, 1005, 1232
BstFNI	CGCG	4 cut(s)	585, 869, 995, 1113
BstH2I	RGCGCY	4 cut(s)	291, 552, 883, 1343
BstHHI	GCGC	8 cut(s)	290, 551, 869, 871, 882, 1090, 1110, 1342
BstKTI	GATC	4 cut(s)	799, 1033, 1066, 1324
BstMAI	GTCTC	3 cut(s)	97, 804, 1340
BstMBI	GATC	4 cut(s)	796, 1030, 1063, 1321
BstMCI	CGRYCG	2 cut(s)	235, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	408, 868, 877
BstNI	CCWGG	3 cut(s)	302, 793, 898
BstPI	GGTNACC	2 cut(s)	439, 640
BstSCI	CCNGG	5 cut(s)	219, 300, 791, 896, 1294
BstSLI	GKGCMC	1 cut(s)	1138
BstSNI	TACGTA	1 cut(s)	1390
BstUI	CGCG	4 cut(s)	585, 869, 995, 1113
BstV1I	GCAGC	4 cut(s)	458, 883, 1056, 1221
BstV2I	GAAGAC	2 cut(s)	454, 586
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BstZI	CGGCCG	2 cut(s)	232, 429
Bsu36I	CCTNAGG	1 cut(s)	636
BsuRI	GGCC	8 cut(s)	234, 305, 311, 411, 431, 633, 722, 1244
BtgI	CCRYGG	1 cut(s)	1111
BtgZI	GCGATG	2 cut(s)	1000, 1383
BtsCI	GGATG	5 cut(s)	267, 297, 939, 1005, 1232
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	1056
Cac8I	GCNNGC	6 cut(s)	232, 286, 450, 781, 869, 1193
CaiI	CAGNNNCTG	1 cut(s)	862
CciI	TCATGA	1 cut(s)	1042
CfoI	GCGC	8 cut(s)	290, 551, 869, 871, 882, 1090, 1110, 1342
Cfr10I	RCCGGY	3 cut(s)	230, 284, 909
Cfr13I	GGNCC	5 cut(s)	393, 501, 632, 720, 912
Cfr42I	CCGCGG	1 cut(s)	1114
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	4 cut(s)	259, 434, 1210, 1387
CspAI	ACCGGT	1 cut(s)	909
CviAII	CATG	3 cut(s)	106, 1043, 1381
CviQI	GTAC	4 cut(s)	259, 434, 1210, 1387
DdeI	CTNAG	4 cut(s)	94, 636, 863, 904
DinI	GGCGCC	3 cut(s)	289, 550, 1341
DpnI	GATC	4 cut(s)	798, 1032, 1065, 1323
DpnII	GATC	4 cut(s)	796, 1030, 1063, 1321
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	4 cut(s)	232, 409, 429, 1242
EagI	CGGCCG	2 cut(s)	232, 429
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
EciI	GGCGGA	1 cut(s)	748
Ecl136II	GAGCTC	2 cut(s)	448, 1191
EclXI	CGGCCG	2 cut(s)	232, 429
Eco105I	TACGTA	1 cut(s)	1390
Eco130I	CCWWGG	3 cut(s)	306, 384, 1239
Eco24I	GRGCYC	2 cut(s)	450, 1193
Eco31I	GGTCTC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	1284
Eco47I	GGWCC	3 cut(s)	393, 501, 912
Eco52I	CGGCCG	2 cut(s)	232, 429
Eco53kI	GAGCTC	2 cut(s)	448, 1191
Eco57I	CTGAAG	1 cut(s)	645
Eco72I	CACGTG	1 cut(s)	893
Eco81I	CCTNAGG	1 cut(s)	636
Eco88I	CYCGRG	2 cut(s)	807, 1325
Eco91I	GGTNACC	2 cut(s)	439, 640
EcoICRI	GAGCTC	2 cut(s)	448, 1191
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	501
EcoO65I	GGTNACC	2 cut(s)	439, 640
EcoRII	CCWGG	3 cut(s)	300, 791, 896
EcoRV	GATATC	1 cut(s)	1284
EcoT14I	CCWWGG	3 cut(s)	306, 384, 1239
EcoT38I	GRGCYC	2 cut(s)	450, 1193
EgeI	GGCGCC	3 cut(s)	289, 550, 1341
EheI	GGCGCC	3 cut(s)	289, 550, 1341
ErhI	CCWWGG	3 cut(s)	306, 384, 1239
Esp3I	CGTCTC	1 cut(s)	1340
FaeI	CATG	3 cut(s)	109, 1046, 1384
FaiI	YATR	3 cut(s)	107, 1044, 1382
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	4 cut(s)	341, 514, 605, 1311
FatI	CATG	3 cut(s)	105, 1042, 1380
FauI	CCCGC	4 cut(s)	590, 808, 1158, 1348
FblI	GTMKAC	1 cut(s)	327
FokI	GGATG	5 cut(s)	254, 284, 946, 992, 1239
FriOI	GRGCYC	2 cut(s)	450, 1193
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	8 cut(s)	289, 550, 868, 870, 881, 1089, 1109, 1341
GsaI	CCCAGC	1 cut(s)	1157
GsuI	CTGGAG	2 cut(s)	980, 1382
HaeII	RGCGCY	4 cut(s)	291, 552, 883, 1343
HaeIII	GGCC	8 cut(s)	234, 305, 311, 411, 431, 633, 722, 1244
HapII	CCGG	9 cut(s)	221, 231, 285, 408, 572, 651, 910, 1295, 1343
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	8 cut(s)	290, 551, 869, 871, 882, 1090, 1110, 1342
Hin1I	GRCGYC	5 cut(s)	288, 354, 459, 549, 1340
Hin1II	CATG	3 cut(s)	109, 1046, 1384
Hin6I	GCGC	8 cut(s)	288, 549, 867, 869, 880, 1088, 1108, 1340
HinP1I	GCGC	8 cut(s)	288, 549, 867, 869, 880, 1088, 1108, 1340
HincII	GTYRAC	2 cut(s)	328, 481
HindII	GTYRAC	2 cut(s)	328, 481
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	6 cut(s)	211, 248, 695, 755, 974, 997
HpaII	CCGG	9 cut(s)	221, 231, 285, 408, 572, 651, 910, 1295, 1343
HphI	GGTGA	6 cut(s)	373, 433, 484, 634, 898, 952
Hpy166II	GTNNAC	3 cut(s)	265, 328, 481
Hpy188I	TCNGA	9 cut(s)	97, 129, 253, 705, 754, 933, 1002, 1206, 1226
Hpy188III	TCNNGA	7 cut(s)	241, 772, 807, 988, 1009, 1043, 1325
Hpy8I	GTNNAC	3 cut(s)	265, 328, 481
HpyAV	CCTTC	9 cut(s)	15, 110, 124, 517, 538, 620, 655, 769, 862
HpyCH4IV	ACGT	6 cut(s)	261, 354, 892, 926, 1080, 1389
HpyCH4V	TGCA	5 cut(s)	42, 276, 474, 1072, 1384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	408, 868, 877
HpyF3I	CTNAG	4 cut(s)	94, 636, 863, 904
HpySE526I	ACGT	6 cut(s)	261, 354, 892, 926, 1080, 1389
Hsp92I	GRCGYC	5 cut(s)	288, 354, 459, 549, 1340
Hsp92II	CATG	3 cut(s)	109, 1046, 1384
HspAI	GCGC	8 cut(s)	288, 549, 867, 869, 880, 1088, 1108, 1340
KasI	GGCGCC	3 cut(s)	287, 548, 1339
KroI	GCCGGC	2 cut(s)	230, 284
KroNI	GCCGGC	2 cut(s)	232, 286
KspI	CCGCGG	1 cut(s)	1114
Kzo9I	GATC	4 cut(s)	796, 1030, 1063, 1321
LmnI	GCTCC	4 cut(s)	900, 961, 1188, 1251
Lsp1109I	GCAGC	4 cut(s)	458, 883, 1056, 1221
LweI	GCATC	1 cut(s)	1014
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	6 cut(s)	261, 354, 892, 926, 1080, 1389
MaeIII	GTNAC	7 cut(s)	22, 439, 490, 640, 740, 886, 1390
MalI	GATC	4 cut(s)	798, 1032, 1065, 1323
MbiI	CCGCTC	1 cut(s)	1254
MboI	GATC	4 cut(s)	796, 1030, 1063, 1321
MboII	GAAGA	9 cut(s)	3, 6, 9, 370, 454, 511, 586, 594, 979
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	3 cut(s)	450, 1138, 1193
MluCI	AATT	7 cut(s)	145, 178, 346, 675, 699, 713, 943
Mly113I	GGCGCC	3 cut(s)	288, 549, 1340
MlyI	GAGTC	3 cut(s)	205, 242, 968
MmeI	TCCRAC	1 cut(s)	276
MreI	CGCCGGCG	1 cut(s)	284
MroNI	GCCGGC	2 cut(s)	230, 284
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	2 cut(s)	144, 665
MspA1I	CMGCKG	2 cut(s)	1113, 1153
MspI	CCGG	9 cut(s)	221, 231, 285, 408, 572, 651, 910, 1295, 1343
MspR9I	CCNGG	5 cut(s)	221, 302, 793, 898, 1296
MvaI	CCWGG	3 cut(s)	302, 793, 898
MvnI	CGCG	4 cut(s)	585, 869, 995, 1113
MwoI	GCNNNNNNNGC	3 cut(s)	408, 868, 877
NaeI	GCCGGC	2 cut(s)	232, 286
NarI	GGCGCC	3 cut(s)	288, 549, 1340
NciI	CCSGG	2 cut(s)	221, 1296
NdeII	GATC	4 cut(s)	796, 1030, 1063, 1321
NgoMIV	GCCGGC	2 cut(s)	230, 284
NlaIII	CATG	3 cut(s)	109, 1046, 1384
NlaIV	GGNNCC	7 cut(s)	289, 502, 550, 798, 963, 1137, 1341
NmeAIII	GCCGAG	2 cut(s)	787, 1221
NmuCI	GTSAC	5 cut(s)	22, 439, 490, 640, 886
PaeR7I	CTCGAG	1 cut(s)	1325
PagI	TCATGA	1 cut(s)	1042
PauI	GCGCGC	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	4 cut(s)	288, 456, 750, 845
PdiI	GCCGGC	2 cut(s)	232, 286
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	695, 755, 997
PflFI	GACNNNGTC	3 cut(s)	173, 458, 590
PflMI	CCANNNNNTGG	1 cut(s)	958
PfoI	TCCNGGA	1 cut(s)	1294
PinAI	ACCGGT	1 cut(s)	909
PleI	GAGTC	3 cut(s)	205, 242, 968
PluTI	GGCGCC	3 cut(s)	291, 552, 1343
PmaCI	CACGTG	1 cut(s)	893
PmlI	CACGTG	1 cut(s)	893
PpsI	GAGTC	3 cut(s)	205, 242, 968
Ppu21I	YACGTR	2 cut(s)	893, 1390
PpuMI	RGGWCCY	1 cut(s)	501
Psp124BI	GAGCTC	2 cut(s)	450, 1193
Psp5II	RGGWCCY	1 cut(s)	501
Psp6I	CCWGG	3 cut(s)	300, 791, 896
PspCI	CACGTG	1 cut(s)	893
PspEI	GGTNACC	2 cut(s)	439, 640
PspFI	CCCAGC	1 cut(s)	1153
PspGI	CCWGG	3 cut(s)	300, 791, 896
PspN4I	GGNNCC	7 cut(s)	289, 502, 550, 798, 963, 1137, 1341
PspPI	GGNCC	5 cut(s)	393, 501, 632, 720, 912
PspPPI	RGGWCCY	1 cut(s)	501
PstNI	CAGNNNCTG	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	796
PsyI	GACNNNGTC	3 cut(s)	173, 458, 590
PteI	GCGCGC	1 cut(s)	867
RsaI	GTAC	4 cut(s)	260, 435, 1211, 1388
RsaNI	GTAC	4 cut(s)	259, 434, 1210, 1387
SacI	GAGCTC	2 cut(s)	450, 1193
SacII	CCGCGG	1 cut(s)	1114
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	2 cut(s)	144, 665
Sau3AI	GATC	4 cut(s)	796, 1030, 1063, 1321
Sau96I	GGNCC	5 cut(s)	393, 501, 632, 720, 912
SchI	GAGTC	3 cut(s)	205, 242, 968
ScrFI	CCNGG	5 cut(s)	221, 302, 793, 898, 1296
SduI	GDGCHC	3 cut(s)	450, 1138, 1193
SfaNI	GCATC	1 cut(s)	1014
SfoI	GGCGCC	3 cut(s)	289, 550, 1341
Sfr274I	CTCGAG	1 cut(s)	1325
Sfr303I	CCGCGG	1 cut(s)	1114
SgrAI	CRCCGGYG	1 cut(s)	284
SgrBI	CCGCGG	1 cut(s)	1114
SgrDI	CGTCGACG	1 cut(s)	326
SinI	GGWCC	3 cut(s)	393, 501, 912
SlaI	CTCGAG	1 cut(s)	1325
SmlI	CTYRAG	3 cut(s)	80, 185, 1325
SmoI	CTYRAG	3 cut(s)	80, 185, 1325
SnaBI	TACGTA	1 cut(s)	1390
Sse9I	AATT	7 cut(s)	145, 178, 346, 675, 699, 713, 943
SspDI	GGCGCC	3 cut(s)	287, 548, 1339
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	2 cut(s)	450, 1193
StyD4I	CCNGG	5 cut(s)	219, 300, 791, 896, 1294
StyI	CCWWGG	3 cut(s)	306, 384, 1239
TaiI	ACGT	6 cut(s)	264, 357, 895, 929, 1083, 1392
TaqI	TCGA	4 cut(s)	327, 1164, 1272, 1326
TaqII	GACCGA	1 cut(s)	79
TasI	AATT	7 cut(s)	145, 178, 346, 675, 699, 713, 943
TatI	WGTACW	1 cut(s)	1209
TauI	GCSGC	6 cut(s)	431, 633, 737, 951, 1113, 1116
TfiI	GAWTC	3 cut(s)	695, 755, 997
Tru1I	TTAA	2 cut(s)	144, 665
Tru9I	TTAA	2 cut(s)	144, 665
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	5 cut(s)	22, 439, 490, 640, 886
TseI	GCWGC	4 cut(s)	471, 871, 1069, 1234
Tsp45I	GTSAC	5 cut(s)	22, 439, 490, 640, 886
TspDTI	ATGAA	3 cut(s)	286, 454, 1369
TspGWI	ACGGA	5 cut(s)	190, 260, 478, 854, 1326
TspRI	CASTG	1 cut(s)	481
Tth111I	GACNNNGTC	3 cut(s)	173, 458, 590
Van91I	CCANNNNNTGG	1 cut(s)	958
VpaK11BI	GGWCC	3 cut(s)	393, 501, 912
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	2 cut(s)	675, 713
XhoI	CTCGAG	1 cut(s)	1325
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	1 cut(s)	690
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.