Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0017333

Physical Location & Seq

Genomic Coordinates Reverse (-)

12072804 .. 12076560

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0147200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCCATAGCCGCCGCCATTTCGGTGCCTCTCACATCCCCAACTCGCCGATCACTCACCTCCTTCCTTCCTCATCAATCGTCTCCTTCTCCTATTCTCCAATTCAACTCTCTCAGAAAAACCGTTAGCCCTCGTTTACGCCTCGTGGCGGCGGCGGCGGCGGCGGCGTCTTCAATGAGCGTCGAAGCAGCCGAAAAGGCGTCGCCGGCGTCTTTTCTGGACCGGAGAGAGGCCGGAATCCTTCACTTCGTCAAGTACCACGGCCTCGGCAACGACTTCATCCTGGTTGATAATAGGGATTCTTCGGAGCCTAAAGTTACTCCGGAGCAAGCGGTGAGGCTATGTGATCGGAACTTCGGGATTGGCGCCGATGGAGTCATCTTCGCGCTTCCTGGCATCAATGGCACTGATTATACCATGAGGATTTTCAATTCCGATGGGAGCGAGCCGGAGATGTGTGGTAACGGAGTCCGGTGCTTTGCGAGATTCATCACAGAGCTTGAGAATCTACATGGGAACCAACGCTTTACAGTACATACTGGTGCTGGTCTAATTGTTCCAGAAATTGTGGATGATGGGAAGGTTAGAGTTGATATGGGGGAGCCAATTCTTAAGGCATCAGATGTACCCACTAAATTACCTCCAAACAAAGATCATTCTGTTGTTAAGGCAGGTTTGGATGTTGATGGAGTAACCTGGAATGTAACTTGTGTCAGTATGGGAAATCCTCATTGTATAACTTTTGGTACAGAAGGAGGCCAGAATTTGCAGGTTGATGAATTGAATTTAGCTGAAATTGGTCCAAAATTTGAGCACCATGAGGTGTTTCCAGCAAGAACTAACACAGAATTTGTGCAAGTTTTCACTCCTTCACACCTCAAAATGCGAGTCTGGGAGCGTGGTGCAGGAGCAACACTGGCTTGTGGAACTGGTGCTTGTGCTGTAGTTGTAGCAGCAGTTCTTGAGGGTCGTGCTGCGCGGAATTGCACGGTTGATTTACCCGGAGGACCATTGCAAATCGAGTGGAGAGAGGAGGACAATCATATTTACATGACTGGCCCAGCCGAAGTAGTTTTTTACGGATCTGTTCCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001822 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006928 GO:0006950 GO:0007275 GO:0007369 GO:0007399 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009790 GO:0009792 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016477 GO:0019219 GO:0019222 GO:0019899 GO:0022008 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0034248 GO:0034250 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044464 GO:0045727 GO:0045934 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048598 GO:0048731 GO:0048793 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051674 GO:0060211 GO:0060212 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0072001 GO:0080090 GO:0097159 GO:1900151 GO:1900152 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

365

Amino Acids

39.24

Weight (kDa)

5.68

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAP_epimerase	PF01678	83 - 203	3.4e-34	Diaminopimelate epimerase
DAP_epimerase	PF01678	237 - 357	2.2e-32	Diaminopimelate epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017333)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19810 FvH4_6g19810 FvH4_6g19810
malus_domestica	MD12G1033800.v1.1
pyrus_communis	pycom12g03140
rosa_chinensis	RchiOBHm_Chr3g0475181
rosa_laevigata	RLG00000023858
rosa_roxburghii	Rroxscaffold_6G00406470
rosa_rugosa	Rorug03G0147200
rosa_samantha	Rh3AG197100 Rh3BG227400 Rh3DG222600
rosa_wichuraiana	Rw3G017930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	662, 760
AccB1I	GGYRCC	2 cut(s)	25, 365
AccII	CGCG	2 cut(s)	386, 979
AccIII	TCCGGA	1 cut(s)	322
AclWI	GGATC	1 cut(s)	1090
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	763, 784, 806, 848
AcyI	GRCGYC	4 cut(s)	167, 200, 209, 366
AfaI	GTAC	4 cut(s)	257, 534, 627, 748
AfiI	CCNNNNNNNGG	2 cut(s)	148, 229
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	4 cut(s)	106, 174, 430, 784
AjnI	CCWGG	3 cut(s)	282, 391, 695
AluBI	AGCT	2 cut(s)	499, 791
AluI	AGCT	2 cut(s)	499, 791
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	1090
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	5 cut(s)	3, 231, 262, 757, 1057
ApeKI	GCWGC	3 cut(s)	188, 953, 974
ApoI	RAATTY	4 cut(s)	763, 784, 806, 848
ArsI	GACNNNNNNTTYG	2 cut(s)	873, 905
AspLEI	GCGC	3 cut(s)	368, 388, 979
AspS9I	GGNCC	4 cut(s)	220, 800, 1007, 1058
AsuC2I	CCSGG	1 cut(s)	1002
AsuHPI	GGTGA	2 cut(s)	49, 346
AvaII	GGWCC	3 cut(s)	220, 800, 1007
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	25, 365
BauI	CACGAG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	3 cut(s)	200, 961, 965
BccI	CCATC	4 cut(s)	365, 431, 569, 680
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	3 cut(s)	284, 393, 697
BcnI	CCSGG	1 cut(s)	1002
BcoDI	GTCTC	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	942
BfoI	RGCGCY	1 cut(s)	369
BfrI	CTTAAG	1 cut(s)	611
BfuAI	ACCTGC	2 cut(s)	662, 760
BglI	GCCNNNNNGGC	1 cut(s)	197
Bme1390I	CCNGG	4 cut(s)	284, 393, 697, 1002
Bme18I	GGWCC	3 cut(s)	220, 800, 1007
BmgT120I	GGNCC	4 cut(s)	220, 800, 1007, 1058
BmiI	GGNNCC	5 cut(s)	27, 309, 367, 518, 603
BmrFI	CCNGG	4 cut(s)	284, 393, 697, 1002
BmsI	GCATC	2 cut(s)	405, 626
BpiI	GAAGAC	1 cut(s)	162
BpuEI	CTTGAG	2 cut(s)	521, 983
BpuMI	CCSGG	1 cut(s)	1002
BsaHI	GRCGYC	4 cut(s)	167, 200, 209, 366
BsaJI	CCNNGG	2 cut(s)	259, 265
BsaWI	WCCGGW	3 cut(s)	222, 322, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 229
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	4 cut(s)	544, 921, 934, 1060
Bse3DI	GCAATG	1 cut(s)	1010
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	3 cut(s)	284, 393, 697
BseDI	CCNNGG	2 cut(s)	259, 265
BseGI	GGATG	4 cut(s)	35, 279, 577, 685
BseLI	CCNNNNNNNGG	2 cut(s)	148, 229
BseMI	GCAATG	1 cut(s)	1010
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	4 cut(s)	544, 921, 934, 1060
BseRI	GAGGAG	1 cut(s)	1046
BseXI	GCAGC	3 cut(s)	200, 961, 965
BseYI	CCCAGC	1 cut(s)	1060
BsgI	GTGCAG	1 cut(s)	924
Bsh1236I	CGCG	2 cut(s)	386, 979
BshFI	GGCC	5 cut(s)	5, 233, 264, 759, 1059
BshNI	GGYRCC	2 cut(s)	25, 365
BsiHKAI	GWGCWC	1 cut(s)	816
BsiSI	CCGG	7 cut(s)	206, 223, 234, 323, 449, 472, 1002
BslI	CCNNNNNNNGG	2 cut(s)	148, 229
BsmAI	GTCTC	1 cut(s)	87
BsmBI	CGTCTC	1 cut(s)	87
BsnI	GGCC	5 cut(s)	5, 233, 264, 759, 1059
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	50, 346, 652, 1082
BspANI	GGCC	5 cut(s)	5, 233, 264, 759, 1059
BspCNI	CTCAG	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	386, 979
BspLI	GGNNCC	5 cut(s)	27, 309, 367, 518, 603
BspMI	ACCTGC	2 cut(s)	662, 760
BspPI	GGATC	1 cut(s)	1090
BspT107I	GGYRCC	2 cut(s)	25, 365
BspTI	CTTAAG	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	1010
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	4 cut(s)	544, 921, 934, 1060
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	259, 265
BssMI	GATC	4 cut(s)	50, 346, 652, 1082
BssNI	GRCGYC	4 cut(s)	167, 200, 209, 366
BssSI	CACGAG	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	3 cut(s)	284, 393, 697
Bst4CI	ACNGT	3 cut(s)	124, 532, 991
BstACI	GRCGYC	4 cut(s)	167, 200, 209, 366
BstAFI	CTTAAG	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	207, 330, 446
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	4 cut(s)	35, 279, 577, 685
BstFNI	CGCG	2 cut(s)	386, 979
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	3 cut(s)	368, 388, 979
BstKTI	GATC	4 cut(s)	53, 349, 655, 1085
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	4 cut(s)	50, 346, 652, 1082
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 155, 158, 161, 164, 197, 206, 402, 917
BstNI	CCWGG	3 cut(s)	284, 393, 697
BstSCI	CCNGG	4 cut(s)	282, 391, 695, 1000
BstSFI	CTRYAG	1 cut(s)	942
BstUI	CGCG	2 cut(s)	386, 979
BstV1I	GCAGC	3 cut(s)	200, 961, 965
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	1082
BstYI	RGATCY	1 cut(s)	1082
BsuRI	GGCC	5 cut(s)	5, 233, 264, 759, 1059
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	4 cut(s)	35, 279, 577, 685
BtsIMutI	CAGTG	2 cut(s)	405, 914
BveI	ACCTGC	2 cut(s)	662, 760
Cac8I	GCNNGC	3 cut(s)	207, 330, 446
CfoI	GCGC	3 cut(s)	368, 388, 979
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	4 cut(s)	220, 800, 1007, 1058
CseI	GACGC	4 cut(s)	156, 169, 189, 198
Csp6I	GTAC	4 cut(s)	256, 533, 626, 747
CspCI	CAANNNNNGTGG	2 cut(s)	1004, 1039
CviAII	CATG	4 cut(s)	418, 512, 818, 1051
CviQI	GTAC	4 cut(s)	256, 533, 626, 747
DdeI	CTNAG	1 cut(s)	113
DinI	GGCGCC	1 cut(s)	367
DpnI	GATC	4 cut(s)	52, 348, 654, 1084
DpnII	GATC	4 cut(s)	50, 346, 652, 1082
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	3 cut(s)	220, 800, 1007
EcoRII	CCWGG	3 cut(s)	282, 391, 695
EgeI	GGCGCC	1 cut(s)	367
EheI	GGCGCC	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	4 cut(s)	421, 515, 821, 1054
FatI	CATG	4 cut(s)	417, 511, 817, 1050
FokI	GGATG	4 cut(s)	22, 266, 584, 692
GlaI	GCGC	3 cut(s)	367, 387, 978
GsaI	CCCAGC	1 cut(s)	1064
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	5 cut(s)	5, 233, 264, 759, 1059
HapII	CCGG	7 cut(s)	206, 223, 234, 323, 449, 472, 1002
HgaI	GACGC	4 cut(s)	156, 169, 189, 198
HhaI	GCGC	3 cut(s)	368, 388, 979
Hin1I	GRCGYC	4 cut(s)	167, 200, 209, 366
Hin1II	CATG	4 cut(s)	421, 515, 821, 1054
Hin6I	GCGC	3 cut(s)	366, 386, 977
HinP1I	GCGC	3 cut(s)	366, 386, 977
HinfI	GANTC	7 cut(s)	237, 299, 375, 468, 486, 505, 888
HpaII	CCGG	7 cut(s)	206, 223, 234, 323, 449, 472, 1002
HphI	GGTGA	2 cut(s)	49, 346
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	5 cut(s)	116, 307, 351, 436, 622
Hpy188III	TCNNGA	5 cut(s)	218, 323, 358, 560, 962
Hpy8I	GTNNAC	1 cut(s)	137
Hpy99I	CGWCG	2 cut(s)	185, 205
HpyAV	CCTTC	7 cut(s)	73, 77, 96, 251, 574, 746, 879
HpyCH4III	ACNGT	3 cut(s)	124, 532, 991
HpyCH4V	TGCA	5 cut(s)	769, 856, 905, 987, 1015
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 155, 158, 161, 164, 197, 206, 402, 917
HpyF3I	CTNAG	1 cut(s)	113
Hsp92I	GRCGYC	4 cut(s)	167, 200, 209, 366
Hsp92II	CATG	4 cut(s)	421, 515, 821, 1054
HspAI	GCGC	3 cut(s)	366, 386, 977
KasI	GGCGCC	1 cut(s)	365
Kpn2I	TCCGGA	1 cut(s)	322
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	50, 346, 652, 1082
LmnI	GCTCC	6 cut(s)	307, 325, 441, 601, 895, 908
Lsp1109I	GCAGC	3 cut(s)	200, 961, 965
LweI	GCATC	2 cut(s)	405, 626
MaeIII	GTNAC	4 cut(s)	316, 461, 691, 703
MalI	GATC	4 cut(s)	52, 348, 654, 1084
MboI	GATC	4 cut(s)	50, 346, 652, 1082
MboII	GAAGA	3 cut(s)	162, 294, 373
MflI	RGATCY	1 cut(s)	1082
MhlI	GDGCHC	1 cut(s)	816
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	366
MlyI	GAGTC	3 cut(s)	384, 477, 897
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	205
MroI	TCCGGA	1 cut(s)	322
MroNI	GCCGGC	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	612, 666
MslI	CAYNNNNRTG	2 cut(s)	23, 540
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	7 cut(s)	206, 223, 234, 323, 449, 472, 1002
MspR9I	CCNGG	4 cut(s)	284, 393, 697, 1002
MvaI	CCWGG	3 cut(s)	284, 393, 697
MvnI	CGCG	2 cut(s)	386, 979
MwoI	GCNNNNNNNGC	9 cut(s)	11, 155, 158, 161, 164, 197, 206, 402, 917
NaeI	GCCGGC	1 cut(s)	207
NarI	GGCGCC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	1002
NdeII	GATC	4 cut(s)	50, 346, 652, 1082
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	4 cut(s)	421, 515, 821, 1054
NlaIV	GGNNCC	5 cut(s)	27, 309, 367, 518, 603
NmeAIII	GCCGAG	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	237, 299, 486, 505
PleI	GAGTC	3 cut(s)	383, 476, 896
PluTI	GGCGCC	1 cut(s)	369
PpsI	GAGTC	3 cut(s)	383, 476, 896
Psp6I	CCWGG	3 cut(s)	282, 391, 695
PspFI	CCCAGC	1 cut(s)	1060
PspGI	CCWGG	3 cut(s)	282, 391, 695
PspN4I	GGNNCC	5 cut(s)	27, 309, 367, 518, 603
PspPI	GGNCC	4 cut(s)	220, 800, 1007, 1058
PsrI	GAACNNNNNNTAC	2 cut(s)	942, 974
PsuI	RGATCY	1 cut(s)	1082
RsaI	GTAC	4 cut(s)	257, 534, 627, 748
RsaNI	GTAC	4 cut(s)	256, 533, 626, 747
RseI	CAYNNNNRTG	2 cut(s)	23, 540
SaqAI	TTAA	2 cut(s)	612, 666
Sau3AI	GATC	4 cut(s)	50, 346, 652, 1082
Sau96I	GGNCC	4 cut(s)	220, 800, 1007, 1058
SchI	GAGTC	3 cut(s)	384, 477, 897
ScrFI	CCNGG	4 cut(s)	284, 393, 697, 1002
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	2 cut(s)	405, 626
SfcI	CTRYAG	1 cut(s)	942
SfoI	GGCGCC	1 cut(s)	367
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	3 cut(s)	220, 800, 1007
SmiMI	CAYNNNNRTG	2 cut(s)	23, 540
SmlI	CTYRAG	3 cut(s)	500, 611, 962
SmoI	CTYRAG	3 cut(s)	500, 611, 962
SspDI	GGCGCC	1 cut(s)	365
StyD4I	CCNGG	4 cut(s)	282, 391, 695, 1000
TaaI	ACNGT	3 cut(s)	124, 532, 991
TaqI	TCGA	2 cut(s)	183, 1020
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	8 cut(s)	14, 17, 152, 155, 158, 161, 164, 167
TfiI	GAWTC	4 cut(s)	237, 299, 486, 505
Tru1I	TTAA	2 cut(s)	612, 666
Tru9I	TTAA	2 cut(s)	612, 666
TscAI	CASTG	2 cut(s)	412, 921
TseI	GCWGC	3 cut(s)	188, 953, 974
TspDTI	ATGAA	3 cut(s)	268, 478, 792
TspGWI	ACGGA	2 cut(s)	480, 1095
TspRI	CASTG	2 cut(s)	412, 921
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	3 cut(s)	220, 800, 1007
XapI	RAATTY	4 cut(s)	763, 784, 806, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.