Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008005

Physical Location & Seq

Genomic Coordinates Forward (+)

29098497 .. 29099310

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0287000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTAGGCCGGCTGTTGGGGTTGAAAGCAAAGCTACCGGGGTATAAGGGCACTATCTCCACCATCTGGCATCTCAGGTTAGGACTCACCATCCAGGATGCCGGTGATCGCTTTATCTTCCAATTTGATAGTGAGTCTGTGCGCAATCGTGTATTACATGGGGGACCCTGGTTTTATCGCAAAACTATGCTGGTGGTGGGAGAGTATGATGGGCTCAGTCCAGTGGAGGAGGTGCCGTTAAATATGATGGAGGCTTGGGTAGCCGTAAAGGGGCTGCCTTTCGCCCTGCGAAACAAAATGGCACTCTCCATCGTGGGTTCTTCGCTAGGGCATGTGCTCTGTTTGGATCCGAATGCTTTAAAGAGAAAAAGAAGAAGAACAGAGGATCAAGATAGCGTTCGATATTCGTCGCCGGATTCGAACCTGGAAGGTTGTGATAAACTTCTGATTAAGGAGAAGGAGGAGATTCAGGTTAAGCCACCGGCGGTGGCCATGGCTGGTCTGTCCTTGACCTCGGGGACAGATGCTTCTGGGGTGTTTTTGGGGATGGGGACCTTGTCAGATCGGGACTGCAATGCGCTGGGTAATCTTGTGCAGGTGTCGGGTTTCCAAGATGATGGGAGACCCCATAATCTTGGAACAGGTCTTGGTAGACATCAAAGCTGCGGGGCAGTTGAAGACAAGGGTTCTGATTCCAATCATCCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009553 GO:0009559 GO:0009561 GO:0009856 GO:0009987 GO:0010197 GO:0012505 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

236

Amino Acids

25.68

Weight (kDa)

7.71

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	2 - 67	3.8e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03810 AT3G03810
fragaria_vesca	FvH4_1g28330 FvH4_1g28330 FvH4_1g28330
malus_domestica	MD12G1006300.v1.1 MD14G1003900.v1.1
prunus_persica	Prupe.7G006400_v2.0.a1 Prupe.7G006400_v2.0.a1 Prupe.7G006400_v2.0.a1 Prupe.7G006400_v2.0.a1 Prupe.7G006400_v2.0.a1 Prupe.7G006400_v2.0.a1
pyrus_communis	pycom12g00460 pycom14g00180
rosa_chinensis	RchiOBHm_Chr3g0496781
rosa_laevigata	RLG00000022504
rosa_multiflora	Rmu_sc0000542.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388710
rosa_rugosa	Rorug03G0287000
rosa_samantha	Rh3AG331400 Rh3CG364200 Rh3DG367500
rosa_wichuraiana	Rw3G029010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc16I	TGCGCA	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	652
AciI	CCGC	2 cut(s)	485, 666
AclWI	GGATC	3 cut(s)	341, 354, 393
AcoI	YGGCCR	1 cut(s)	489
AfiI	CCNNNNNNNGG	3 cut(s)	16, 66, 270
AgsI	TTSAA	2 cut(s)	25, 677
AjnI	CCWGG	3 cut(s)	93, 167, 423
AluBI	AGCT	2 cut(s)	34, 663
AluI	AGCT	2 cut(s)	34, 663
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	616
AlwI	GGATC	3 cut(s)	341, 354, 393
Ama87I	CYCGRG	1 cut(s)	514
AoxI	GGCC	2 cut(s)	7, 489
ApeKI	GCWGC	2 cut(s)	274, 663
AspLEI	GCGC	2 cut(s)	144, 580
AspS9I	GGNCC	2 cut(s)	164, 552
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	79, 116
AsuII	TTCGAA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	514
AvaII	GGWCC	2 cut(s)	164, 552
BaeGI	GKGCMC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	261, 650
BccI	CCATC	7 cut(s)	71, 98, 203, 241, 317, 541, 611
BceAI	ACGGC	2 cut(s)	220, 248
BciT130I	CCWGG	3 cut(s)	95, 169, 425
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	616
BfaI	CTAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	2 cut(s)	275, 664
BlsI	GCNGC	2 cut(s)	276, 665
Bme1390I	CCNGG	4 cut(s)	39, 95, 169, 425
Bme18I	GGWCC	2 cut(s)	164, 552
BmeT110I	CYCGRG	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	164, 552
BmiI	GGNNCC	5 cut(s)	165, 166, 234, 348, 553
BmrFI	CCNGG	4 cut(s)	39, 95, 169, 425
BmsI	GCATC	3 cut(s)	79, 88, 514
BpiI	GAAGAC	1 cut(s)	684
Bpu14I	TTCGAA	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	616
BsaJI	CCNNGG	4 cut(s)	38, 167, 492, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 66, 270
Bse118I	RCCGGY	3 cut(s)	9, 101, 481
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	580
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	3 cut(s)	95, 169, 425
BseDI	CCNNGG	4 cut(s)	38, 167, 492, 513
BseGI	GGATG	4 cut(s)	90, 103, 552, 700
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	3 cut(s)	16, 66, 270
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	2 cut(s)	88, 229
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	242, 476
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	261, 650
BseYI	CCCAGC	1 cut(s)	580
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	2 cut(s)	9, 491
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	5 cut(s)	10, 38, 102, 413, 482
BslFI	GGGAC	4 cut(s)	177, 532, 565, 581
BslI	CCNNNNNNNGG	3 cut(s)	16, 66, 270
BsmAI	GTCTC	1 cut(s)	616
BsmFI	GGGAC	4 cut(s)	177, 532, 565, 581
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	9, 491
Bso31I	GGTCTC	1 cut(s)	616
BsoBI	CYCGRG	1 cut(s)	514
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	53, 216, 339
Bsp143I	GATC	4 cut(s)	106, 346, 385, 562
Bsp19I	CCATGG	1 cut(s)	492
BspACI	CCGC	2 cut(s)	485, 666
BspANI	GGCC	2 cut(s)	9, 491
BspCNI	CTCAG	2 cut(s)	87, 228
BspLI	GGNNCC	5 cut(s)	165, 166, 234, 348, 553
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	3 cut(s)	341, 354, 393
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	580
BsrFI	RCCGGY	3 cut(s)	9, 101, 481
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	3 cut(s)	9, 101, 481
BssECI	CCNNGG	4 cut(s)	38, 167, 492, 513
BssMI	GATC	4 cut(s)	106, 346, 385, 562
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	3 cut(s)	95, 169, 425
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	74, 215
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	4 cut(s)	90, 103, 552, 700
BstHHI	GCGC	2 cut(s)	144, 580
BstKTI	GATC	4 cut(s)	109, 349, 388, 565
BstMAI	GTCTC	1 cut(s)	616
BstMBI	GATC	4 cut(s)	106, 346, 385, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	3 cut(s)	95, 169, 425
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	4 cut(s)	37, 93, 167, 423
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	261, 650
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	2 cut(s)	617, 635
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	9, 491
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	4 cut(s)	90, 103, 552, 700
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	2 cut(s)	144, 580
Cfr10I	RCCGGY	3 cut(s)	9, 101, 481
Cfr13I	GGNCC	2 cut(s)	164, 552
CviAII	CATG	3 cut(s)	158, 332, 493
DdeI	CTNAG	2 cut(s)	74, 215
DpnI	GATC	4 cut(s)	108, 348, 387, 564
DpnII	GATC	4 cut(s)	106, 346, 385, 562
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	616
Eco47I	GGWCC	2 cut(s)	164, 552
Eco88I	CYCGRG	1 cut(s)	514
EcoO109I	RGGNCCY	2 cut(s)	164, 552
EcoRII	CCWGG	3 cut(s)	93, 167, 423
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	3 cut(s)	161, 335, 496
FaiI	YATR	8 cut(s)	45, 159, 188, 207, 245, 333, 494, 630
FaqI	GGGAC	4 cut(s)	177, 532, 565, 581
FatI	CATG	3 cut(s)	157, 331, 492
FauI	CCCGC	1 cut(s)	659
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	2 cut(s)	275, 664
FokI	GGATG	4 cut(s)	77, 110, 559, 687
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	275, 664
FspBI	CTAG	1 cut(s)	326
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	2 cut(s)	143, 579
GluI	GCNGC	2 cut(s)	275, 664
GsaI	CCCAGC	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	9, 491
HapII	CCGG	5 cut(s)	10, 38, 102, 413, 482
HhaI	GCGC	2 cut(s)	144, 580
Hin1II	CATG	3 cut(s)	161, 335, 496
Hin6I	GCGC	2 cut(s)	142, 578
HinP1I	GCGC	2 cut(s)	142, 578
HinfI	GANTC	5 cut(s)	84, 134, 416, 466, 692
HpaII	CCGG	5 cut(s)	10, 38, 102, 413, 482
HphI	GGTGA	2 cut(s)	79, 116
Hpy166II	GTNNAC	1 cut(s)	653
Hpy188I	TCNGA	4 cut(s)	351, 447, 562, 691
Hpy188III	TCNNGA	2 cut(s)	389, 566
Hpy8I	GTNNAC	1 cut(s)	653
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	2 cut(s)	422, 451
HpyCH4V	TGCA	2 cut(s)	573, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	74, 215
Hsp92II	CATG	3 cut(s)	161, 335, 496
HspAI	GCGC	2 cut(s)	142, 578
KflI	GGGWCCC	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	9
KroNI	GCCGGC	1 cut(s)	11
Kzo9I	GATC	4 cut(s)	106, 346, 385, 562
Lsp1109I	GCAGC	2 cut(s)	261, 650
LweI	GCATC	3 cut(s)	79, 88, 514
MaeI	CTAG	1 cut(s)	326
MalI	GATC	4 cut(s)	108, 348, 387, 564
MboI	GATC	4 cut(s)	106, 346, 385, 562
MboII	GAAGA	5 cut(s)	109, 312, 384, 387, 689
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	3 cut(s)	53, 216, 339
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	1 cut(s)	122
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	2 cut(s)	78, 143
MnlI	CCTC	6 cut(s)	220, 223, 244, 376, 454, 523
Mox20I	TGGCCA	1 cut(s)	491
MroNI	GCCGGC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	4 cut(s)	239, 359, 450, 474
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	5 cut(s)	10, 38, 102, 413, 482
MspR9I	CCNGG	4 cut(s)	39, 95, 169, 425
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	3 cut(s)	95, 169, 425
MwoI	GCNNNNNNNGC	1 cut(s)	260
NaeI	GCCGGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	4 cut(s)	106, 346, 385, 562
NgoMIV	GCCGGC	1 cut(s)	9
NlaIII	CATG	3 cut(s)	161, 335, 496
NlaIV	GGNNCC	5 cut(s)	165, 166, 234, 348, 553
NsbI	TGCGCA	1 cut(s)	143
NspI	RCATGY	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	416, 466, 692
PflFI	GACNNNGTC	1 cut(s)	556
PflMI	CCANNNNNTGG	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	276, 665
PleI	GAGTC	2 cut(s)	78, 142
PpsI	GAGTC	2 cut(s)	78, 142
PpuMI	RGGWCCY	2 cut(s)	164, 552
Psp5II	RGGWCCY	2 cut(s)	164, 552
Psp6I	CCWGG	3 cut(s)	93, 167, 423
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	3 cut(s)	93, 167, 423
PspN4I	GGNNCC	5 cut(s)	165, 166, 234, 348, 553
PspPI	GGNCC	2 cut(s)	164, 552
PspPPI	RGGWCCY	2 cut(s)	164, 552
PsuI	RGATCY	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	556
SaqAI	TTAA	4 cut(s)	239, 359, 450, 474
SatI	GCNGC	2 cut(s)	275, 664
Sau3AI	GATC	4 cut(s)	106, 346, 385, 562
Sau96I	GGNCC	2 cut(s)	164, 552
SchI	GAGTC	2 cut(s)	78, 143
ScrFI	CCNGG	4 cut(s)	39, 95, 169, 425
SduI	GDGCHC	3 cut(s)	53, 216, 339
SfaNI	GCATC	3 cut(s)	79, 88, 514
SfuI	TTCGAA	1 cut(s)	419
SgrAI	CRCCGGYG	1 cut(s)	481
SinI	GGWCC	2 cut(s)	164, 552
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	2 cut(s)	485, 666
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	4 cut(s)	37, 93, 167, 423
StyI	CCWWGG	1 cut(s)	492
TaqI	TCGA	2 cut(s)	400, 419
TasI	AATT	1 cut(s)	122
TfiI	GAWTC	3 cut(s)	416, 466, 692
Tru1I	TTAA	4 cut(s)	239, 359, 450, 474
Tru9I	TTAA	4 cut(s)	239, 359, 450, 474
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	2 cut(s)	274, 663
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	556
Van91I	CCANNNNNTGG	1 cut(s)	66
VpaK11BI	GGWCC	2 cut(s)	164, 552
XceI	RCATGY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	652
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.