Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016540

Physical Location & Seq

Genomic Coordinates Reverse (-)

39432266 .. 39432664

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGGGAATAAAATAGATCTTTTAACTGCAAAACTTATGGAGGATAAGACAAGAAAGCTGCAAGATATTGGTCCTTTCACAGGGTGTCATGATCTTTATGATGACGACGTATATTTGATTGCGTTTGTATTTCTGGAATCGGAAGATCTAGATTTCAGAATTTTCCAAACTGATTATGAACATCTTGACCGTTTGGCAATGAAATGCCTAGAGCCGGGGGACTTGTTACCTCCGAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.34

Weight (kDa)

4.45

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14455
fragaria_vesca	FvH4_4g03051
malus_domestica	MD13G1210000.v1.1 MD16G1212900.v1.1
pyrus_communis	pycom16g17870
rosa_chinensis	RchiOBHm_Chr4g0391341
rosa_laevigata	RLG00000009871
rosa_multiflora	Rmu_sc0005322.1_g000031
rosa_roxburghii	Rroxscaffold_5G00337080
rosa_rugosa	Rorug03G0335500
rosa_samantha	Rh4AG036600 Rh4BG031300 Rh4CG039900
rosa_wichuraiana	Rw4G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	80, 214
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	216
BfaI	CTAG	2 cut(s)	149, 209
BglII	AGATCT	2 cut(s)	16, 145
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 214
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	2 cut(s)	80, 214
BseMI	GCAATG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	80, 214
BsmFI	GGGAC	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	16, 91, 145
BspHI	TCATGA	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	16, 91, 145
Bst4CI	ACNGT	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	78
BstKTI	GATC	3 cut(s)	19, 94, 148
BstMBI	GATC	3 cut(s)	16, 91, 145
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	16, 145
BstYI	RGATCY	2 cut(s)	16, 145
CciI	TCATGA	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	2 cut(s)	58, 214
CviKI_1	RGCY	2 cut(s)	58, 214
DpnI	GATC	3 cut(s)	18, 93, 147
DpnII	GATC	3 cut(s)	16, 91, 145
DraIII	CACNNNGTG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	92
FaiI	YATR	6 cut(s)	38, 90, 99, 112, 177, 241
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	149, 209
GluI	GCNGC	1 cut(s)	59
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	142, 158, 234
Hpy188III	TCNNGA	4 cut(s)	89, 134, 149, 185
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	29, 61
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	3 cut(s)	16, 91, 145
LpnPI	CCDG	3 cut(s)	66, 119, 228
Lsp1109I	GCAGC	1 cut(s)	45
MaeI	CTAG	2 cut(s)	149, 209
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	3 cut(s)	18, 93, 147
MboI	GATC	3 cut(s)	16, 91, 145
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	2 cut(s)	16, 145
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	2 cut(s)	34, 240
MseI	TTAA	1 cut(s)	23
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	216
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	16, 91, 145
NlaIII	CATG	1 cut(s)	92
PagI	TCATGA	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	16, 145
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	3 cut(s)	16, 91, 145
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	3 cut(s)	60, 111, 232
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	1 cut(s)	159
SspMI	CTAG	2 cut(s)	149, 209
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	111
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	192, 215
VpaK11BI	GGWCC	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	78
XapI	RAATTY	1 cut(s)	159
XbaI	TCTAGA	1 cut(s)	148
XspI	CTAG	2 cut(s)	149, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.