Rh4CG039900

Bet1-like SNARE

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
8147439 .. 8150527
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG039900.1

Sequence Viewer

Length: 390 bp
ATGAGTTACAGAAGTGTGCATCGTGCCTCCAAAGCATCTCTTTTAGATGGCCTTGAAGAAGGTGGTCTCAGGGCCTCCTCCTCATACTCCGATATAAATGAGAAGGACAATGACAAAGCTGTGCAAAGTTTGCAAGACAGAGTTGTTTTCCTAAAGAGAATAACAGGTGACATACATGAAGAGGTGGAAAGCCATAATCGTTTGCTTGACAGAATGGGAAATGACATGGATGCATCAAGGGGTATAATGTCTGGAACAATGGATCGGTTTAAGAAGGTGTTTGAGAAAAAATCAAGCCGGCGAATGTGTGTACTTGTGGGCTATTTTGTGGCTTTCTTCTTAATCATATACTTTCTCTTCAGGGTTCGCAGATTATTCATTCATGGTTGA

Protein Analysis

129

Amino Acids

14.92

Weight (kDa)

9.56

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14455
fragaria_vesca FvH4_4g03051
malus_domestica MD13G1210000.v1.1 MD16G1212900.v1.1
pyrus_communis pycom16g17870
rosa_chinensis RchiOBHm_Chr4g0391341
rosa_laevigata RLG00000009871
rosa_multiflora Rmu_sc0005322.1_g000031
rosa_roxburghii Rroxscaffold_5G00337080
rosa_rugosa Rorug03G0335500
rosa_samantha Rh4AG036600 Rh4BG031300 Rh4CG039900
rosa_wichuraiana Rw4G002870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 343
AfaI GTAC 1 cut(s) 312
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 270
AoxI GGCC 2 cut(s) 49, 72
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 179
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 72
BmsI GCATC 4 cut(s) 28, 44, 220, 242
BsaI GGTCTC 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 297
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 67, 70
BshFI GGCC 2 cut(s) 51, 74
BsiSI CCGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 51, 74
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 262
BspANI GGCC 2 cut(s) 51, 74
BspCNI CTCAG 1 cut(s) 81
BspPI GGATC 1 cut(s) 270
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 297
BssMI GATC 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 174, 362
BstAPI GCANNNNNTGC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 32, 130
BsuRI GGCC 2 cut(s) 51, 74
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 311
CviAII CATG 3 cut(s) 176, 226, 383
CviJI RGCY 7 cut(s) 51, 74, 119, 192, 297, 321, 332
CviKI_1 RGCY 7 cut(s) 51, 74, 119, 192, 297, 321, 332
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 174, 362
EarI CTCTTC 2 cut(s) 174, 362
Eco31I GGTCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 3 cut(s) 179, 229, 386
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 3 cut(s) 175, 225, 382
FokI GGATG 1 cut(s) 242
HaeIII GGCC 2 cut(s) 51, 74
HapII CCGG 1 cut(s) 298
Hin1II CATG 3 cut(s) 179, 229, 386
HpaII CCGG 1 cut(s) 298
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 3 cut(s) 53, 97, 268
HpyCH4V TGCA 4 cut(s) 19, 124, 133, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 130
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 3 cut(s) 179, 229, 386
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 55, 150, 237, 311, 346
LweI GCATC 4 cut(s) 28, 44, 220, 242
MaeIII GTNAC 2 cut(s) 5, 167
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 4 cut(s) 68, 191, 328, 349
MnlI CCTC 5 cut(s) 37, 85, 88, 91, 175
Mph1103I ATGCAT 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 297
MseI TTAA 2 cut(s) 270, 341
MspI CCGG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 32, 130
NaeI GCCGGC 1 cut(s) 299
NdeII GATC 1 cut(s) 262
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 3 cut(s) 179, 229, 386
NmuCI GTSAC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 235
PdiI GCCGGC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 72
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SaqAI TTAA 2 cut(s) 270, 341
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 72
SetI ASST 5 cut(s) 64, 121, 169, 186, 279
SfaNI GCATC 4 cut(s) 28, 44, 220, 242
TatI WGTACW 1 cut(s) 310
Tru1I TTAA 2 cut(s) 270, 341
Tru9I TTAA 2 cut(s) 270, 341
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 192, 367, 371
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.