Rorug03G0346400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016689
Physical Location & Seq
Forward (+)
41947629 .. 41951127
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0346400.1

Sequence Viewer

Length: 1212 bp
ATGTGGGAACCAGAAGCAGTCTTTGAAGCCCAGCCTATGTGTGATCGACTCAATGTTCCGGAGCAAGATATTGCCTTGAAGCATAGCGGAGGCGATTGCTCGTTGAAAAAGTTGCAGCGTTTCTGTGGCAGCGCACAGAGGAGGCGGCGATGCCTAGGGGTGGGCTCGCGAAACCGAAAACCAAAAAAAAACCACACCGATACCCGAACCGCAGCCGAAAAAAACCTCACAGAAAAAAACCGCACCGAACAGGAAAAAACTGCACCGCACCGAATCTGTTCGGTTCGGTTTTCAGTTTCGGCCCGGGTTTGGAGACCAACTTACCTCGCTAGAGTCGGCTTGCCTCGAGTCGAATCCTCATTTCCTCTGTTCCTCAGCCTAAACTCTCTCGGCCCCGACTTTTTCCTCATCTCTCAGTTGAATCCTCGCCACCACCGGACGCCGCCAATCAATTCCGGCGACACAAAGACGGGAACTCAGGAAGACAGGAACTCACAGCAGCTTTCCATCTCTCTTTCCATCGGTAAGAGATTGAAGAAGAGTCGGCTTCAGAGATTGAAGAATTCCAGATTAGCTTGGAAGAGACTTACAGATTTGGGGCAAAGATCTACCCTGGCAGAGGCATCAAATTTATCTGGTTCGACTCTCAGAGATGAAGGTGATGGTTGCATATTTGCTCGCTGTGTTGGGTGGCAAGACCAGCTCTCTTGCTGGGGGTTAATTGAATGGAGCAGAGATTGGTTATTTGCAGTTCAGATAAAACGAAACCCACTACATCATCACCTCTGGATCTCTCTATTTCGTTTTCTGGTCAATTCGTTTATGGCTGTACTAAAATCAACAGAAGATAATGACCAAGTCCAAGAATTTCCTCAACAATCTCATCAAAACCTTCGAGTTCAGCTAAAGCAAAGAGGACTTAGAGAGAATTGCCCAACAGGAACAGGTTCTCCAGTTTACAAGGATAGTTTCTTTGCTAGTTTTTGCTGGGATGATGCTATCATTTCAAGGATGCAAAGTAGTGAACTGGATGGTGGTGCTGATCAAACAACACTATTAATTACTGCAGAGGCTGTGCCAAAGAGAATCCTCGAGTTCATGAATGTGCCTGACTTGACTAGGGAGAACGTAGCTAGTCATTTGCAGGCTCCAATGGCCTTGATTCCTAATTTCCTAGTTTCCGGAGTAATTTTTGTAAGTAGATGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

45.9

Weight (kDa)

9.71

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016689)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04670
fragaria_vesca FvH4_4g05720
malus_domestica MD00G1100800.v1.1
prunus_persica Prupe.1G060600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0396891
rosa_laevigata RLG00000009493
rosa_multiflora Rmu_sc0008929.1_g000008
rosa_rugosa Rorug03G0346300 Rorug03G0346400
rosa_samantha Rh4AG073800 Rh4BG071400 Rh4CG079600 Rh4DG068800
rosa_wichuraiana Rw4G006000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AccIII TCCGGA 2 cut(s) 58, 1181
AciI CCGC 6 cut(s) 87, 145, 210, 241, 266, 443
AclWI GGATC 1 cut(s) 797
AcsI RAATTY 3 cut(s) 562, 628, 866
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 1 cut(s) 831
AfiI CCNNNNNNNGG 3 cut(s) 160, 309, 619
AgsI TTSAA 8 cut(s) 26, 79, 106, 421, 535, 559, 725, 1008
AjnI CCWGG 1 cut(s) 612
AloI GAACNNNNNNTCC 2 cut(s) 934, 966
AluBI AGCT 5 cut(s) 502, 575, 703, 904, 1133
AluI AGCT 5 cut(s) 502, 575, 703, 904, 1133
Alw26I GTCTC 2 cut(s) 307, 577
AlwI GGATC 1 cut(s) 797
AlwNI CAGNNNCTG 1 cut(s) 1073
Ama87I CYCGRG 3 cut(s) 303, 345, 1091
Aor13HI TCCGGA 2 cut(s) 58, 1181
AoxI GGCC 3 cut(s) 300, 391, 1155
ApeKI GCWGC 4 cut(s) 115, 129, 212, 499
ApoI RAATTY 3 cut(s) 562, 628, 866
AseI ATTAAT 1 cut(s) 1058
Asp700I GAANNNNTTC 2 cut(s) 277, 946
AspA2I CCTAGG 1 cut(s) 154
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 301, 392
AsuC2I CCSGG 2 cut(s) 304, 305
AsuHPI GGTGA 2 cut(s) 671, 773
AvaI CYCGRG 3 cut(s) 303, 345, 1091
AvrII CCTAGG 1 cut(s) 154
BanII GRGCYC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 489
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 4 cut(s) 127, 141, 224, 511
BccI CCATC 5 cut(s) 515, 527, 656, 1025, 1197
BciT130I CCWGG 1 cut(s) 614
BclI TGATCA 1 cut(s) 1042
BcnI CCSGG 2 cut(s) 304, 305
BcoDI GTCTC 2 cut(s) 307, 577
BfaI CTAG 6 cut(s) 155, 330, 978, 1119, 1134, 1175
BfmI CTRYAG 1 cut(s) 1065
BglII AGATCT 1 cut(s) 605
BisI GCNGC 6 cut(s) 116, 130, 146, 213, 443, 500
BlnI CCTAGG 1 cut(s) 154
BlsI GCNGC 6 cut(s) 117, 131, 147, 214, 444, 501
Bme1390I CCNGG 3 cut(s) 304, 305, 614
BmeT110I CYCGRG 3 cut(s) 303, 345, 1091
BmgT120I GGNCC 2 cut(s) 301, 392
BmiI GGNNCC 3 cut(s) 9, 394, 1149
BmrFI CCNGG 3 cut(s) 304, 305, 614
BmsI GCATC 4 cut(s) 140, 632, 985, 1002
BpiI GAAGAC 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 936
Bpu10I CCTNAGC 1 cut(s) 374
BpuMI CCSGG 2 cut(s) 304, 305
BsaHI GRCGYC 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 3 cut(s) 154, 303, 612
BsaWI WCCGGW 3 cut(s) 58, 435, 1181
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 309, 619
Bse1I ACTGG 2 cut(s) 953, 1032
BseAI TCCGGA 2 cut(s) 58, 1181
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 3 cut(s) 154, 303, 612
BseGI GGATG 3 cut(s) 997, 1017, 1036
BseLI CCNNNNNNNGG 3 cut(s) 160, 309, 619
BseMII CTCAG 4 cut(s) 388, 428, 491, 661
BseNI ACTGG 2 cut(s) 953, 1032
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 4 cut(s) 127, 141, 224, 511
BseYI CCCAGC 3 cut(s) 30, 711, 987
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 302, 393, 1157
BsiHKCI CYCGRG 3 cut(s) 303, 345, 1091
BsiSI CCGG 5 cut(s) 59, 304, 436, 456, 1182
BslI CCNNNNNNNGG 3 cut(s) 160, 309, 619
BsmAI GTCTC 2 cut(s) 307, 577
BsnI GGCC 3 cut(s) 302, 393, 1157
Bso31I GGTCTC 1 cut(s) 307
BsoBI CYCGRG 3 cut(s) 303, 345, 1091
Bsp1286I GDGCHC 1 cut(s) 167
Bsp13I TCCGGA 2 cut(s) 58, 1181
Bsp143I GATC 4 cut(s) 43, 605, 789, 1042
Bsp68I TCGCGA 1 cut(s) 169
BspACI CCGC 6 cut(s) 87, 145, 210, 241, 266, 443
BspANI GGCC 3 cut(s) 302, 393, 1157
BspCNI CTCAG 4 cut(s) 387, 427, 490, 660
BspEI TCCGGA 2 cut(s) 58, 1181
BspFNI CGCG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 3 cut(s) 9, 394, 1149
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 307
BsrI ACTGG 2 cut(s) 953, 1032
BssECI CCNNGG 3 cut(s) 154, 303, 612
BssMI GATC 4 cut(s) 43, 605, 789, 1042
BssNI GRCGYC 1 cut(s) 440
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 614
Bst6I CTCTTC 2 cut(s) 533, 575
BstACI GRCGYC 1 cut(s) 440
BstC8I GCNNGC 4 cut(s) 167, 341, 679, 1146
BstDEI CTNAG 5 cut(s) 374, 414, 477, 647, 920
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 3 cut(s) 997, 1017, 1036
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 4 cut(s) 46, 608, 792, 1045
BstMAI GTCTC 2 cut(s) 307, 577
BstMBI GATC 4 cut(s) 43, 605, 789, 1042
BstMWI GCNNNNNNNGC 2 cut(s) 700, 1154
BstNI CCWGG 1 cut(s) 614
BstSCI CCNGG 3 cut(s) 302, 303, 612
BstSFI CTRYAG 1 cut(s) 1065
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 127, 141, 224, 511
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 2 cut(s) 605, 789
BstYI RGATCY 2 cut(s) 605, 789
BsuRI GGCC 3 cut(s) 302, 393, 1157
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 3 cut(s) 997, 1017, 1036
BtuMI TCGCGA 1 cut(s) 169
Cac8I GCNNGC 4 cut(s) 167, 341, 679, 1146
CaiI CAGNNNCTG 1 cut(s) 1073
CciI TCATGA 1 cut(s) 1098
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 301, 392
Cfr9I CCCGGG 1 cut(s) 303
CseI GACGC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 830
CviAII CATG 1 cut(s) 1099
CviQI GTAC 1 cut(s) 830
DdeI CTNAG 5 cut(s) 374, 414, 477, 647, 920
DpnI GATC 4 cut(s) 45, 607, 791, 1044
DpnII GATC 4 cut(s) 43, 605, 789, 1042
Eam1104I CTCTTC 2 cut(s) 533, 575
EarI CTCTTC 2 cut(s) 533, 575
Eco130I CCWWGG 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 3 cut(s) 303, 345, 1091
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 1 cut(s) 1102
FaiI YATR 5 cut(s) 38, 84, 671, 824, 1100
FatI CATG 1 cut(s) 1098
FbaI TGATCA 1 cut(s) 1042
Fnu4HI GCNGC 6 cut(s) 116, 130, 146, 213, 443, 500
FokI GGATG 3 cut(s) 1004, 1024, 1043
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 6 cut(s) 116, 130, 146, 213, 443, 500
FspBI CTAG 6 cut(s) 155, 330, 978, 1119, 1134, 1175
GlaI GCGC 1 cut(s) 133
GluI GCNGC 6 cut(s) 116, 130, 146, 213, 443, 500
GsaI CCCAGC 3 cut(s) 34, 715, 991
GsuI CTGGAG 1 cut(s) 936
HaeIII GGCC 3 cut(s) 302, 393, 1157
HapII CCGG 5 cut(s) 59, 304, 436, 456, 1182
HgaI GACGC 1 cut(s) 448
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 1 cut(s) 1102
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HpaII CCGG 5 cut(s) 59, 304, 436, 456, 1182
HphI GGTGA 2 cut(s) 671, 773
Hpy166II GTNNAC 2 cut(s) 958, 1025
Hpy188I TCNGA 3 cut(s) 552, 650, 756
Hpy188III TCNNGA 7 cut(s) 59, 168, 479, 567, 787, 1099, 1182
Hpy8I GTNNAC 2 cut(s) 958, 1025
HpyAV CCTTC 2 cut(s) 650, 902
HpyCH4IV ACGT 1 cut(s) 1128
HpyCH4V TGCA 7 cut(s) 115, 263, 669, 749, 1015, 1067, 1144
HpyF10VI GCNNNNNNNGC 2 cut(s) 700, 1154
HpyF3I CTNAG 5 cut(s) 374, 414, 477, 647, 920
HpySE526I ACGT 1 cut(s) 1128
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 1 cut(s) 1102
HspAI GCGC 1 cut(s) 132
Kpn2I TCCGGA 2 cut(s) 58, 1181
Ksp22I TGATCA 1 cut(s) 1042
Kzo9I GATC 4 cut(s) 43, 605, 789, 1042
LmnI GCTCC 3 cut(s) 61, 729, 1153
Lsp1109I GCAGC 4 cut(s) 127, 141, 224, 511
LweI GCATC 4 cut(s) 140, 632, 985, 1002
MaeI CTAG 6 cut(s) 155, 330, 978, 1119, 1134, 1175
MaeII ACGT 1 cut(s) 1128
MalI GATC 4 cut(s) 45, 607, 791, 1044
MboI GATC 4 cut(s) 43, 605, 789, 1042
MboII GAAGA 6 cut(s) 494, 547, 550, 571, 592, 857
MflI RGATCY 2 cut(s) 605, 789
MhlI GDGCHC 1 cut(s) 167
MlyI GAGTC 5 cut(s) 42, 342, 357, 550, 637
MroI TCCGGA 2 cut(s) 58, 1181
MroXI GAANNNNTTC 2 cut(s) 277, 946
MseI TTAA 2 cut(s) 719, 1058
MslI CAYNNNNRTG 1 cut(s) 1103
MspI CCGG 5 cut(s) 59, 304, 436, 456, 1182
MspR9I CCNGG 3 cut(s) 304, 305, 614
MvaI CCWGG 1 cut(s) 614
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 700, 1154
NciI CCSGG 2 cut(s) 304, 305
NdeII GATC 4 cut(s) 43, 605, 789, 1042
NlaIII CATG 1 cut(s) 1102
NlaIV GGNNCC 3 cut(s) 9, 394, 1149
NmeAIII GCCGAG 1 cut(s) 369
NruI TCGCGA 1 cut(s) 169
PaeR7I CTCGAG 2 cut(s) 345, 1091
PagI TCATGA 1 cut(s) 1098
PdmI GAANNNNTTC 2 cut(s) 277, 946
PfeI GAWTC 5 cut(s) 273, 353, 421, 1086, 1162
PflFI GACNNNGTC 1 cut(s) 857
PkrI GCNGC 6 cut(s) 117, 131, 147, 214, 444, 501
PleI GAGTC 5 cut(s) 42, 341, 356, 549, 637
PpsI GAGTC 5 cut(s) 42, 341, 356, 549, 637
PshBI ATTAAT 1 cut(s) 1058
Psp6I CCWGG 1 cut(s) 612
PspFI CCCAGC 3 cut(s) 30, 711, 987
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 3 cut(s) 9, 394, 1149
PspPI GGNCC 2 cut(s) 301, 392
PspXI VCTCGAGB 2 cut(s) 345, 1091
PstI CTGCAG 1 cut(s) 1069
PstNI CAGNNNCTG 1 cut(s) 1073
PsuI RGATCY 2 cut(s) 605, 789
PsyI GACNNNGTC 1 cut(s) 857
RruI TCGCGA 1 cut(s) 169
RsaI GTAC 1 cut(s) 831
RsaNI GTAC 1 cut(s) 830
RseI CAYNNNNRTG 1 cut(s) 1103
SaqAI TTAA 2 cut(s) 719, 1058
SatI GCNGC 6 cut(s) 116, 130, 146, 213, 443, 500
Sau3AI GATC 4 cut(s) 43, 605, 789, 1042
Sau96I GGNCC 2 cut(s) 301, 392
SchI GAGTC 5 cut(s) 42, 342, 357, 550, 637
ScrFI CCNGG 3 cut(s) 304, 305, 614
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 4 cut(s) 140, 632, 985, 1002
SfcI CTRYAG 1 cut(s) 1065
Sfr274I CTCGAG 2 cut(s) 345, 1091
SlaI CTCGAG 2 cut(s) 345, 1091
SmaI CCCGGG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 1103
SmlI CTYRAG 2 cut(s) 345, 1091
SmoI CTYRAG 2 cut(s) 345, 1091
SsiI CCGC 6 cut(s) 87, 145, 210, 241, 266, 443
SspMI CTAG 6 cut(s) 155, 330, 978, 1119, 1134, 1175
StyD4I CCNGG 3 cut(s) 302, 303, 612
StyI CCWWGG 1 cut(s) 154
TaiI ACGT 1 cut(s) 1131
TaqI TCGA 6 cut(s) 46, 346, 351, 641, 895, 1092
TatI WGTACW 1 cut(s) 829
TauI GCSGC 2 cut(s) 148, 445
TfiI GAWTC 5 cut(s) 273, 353, 421, 1086, 1162
Tru1I TTAA 2 cut(s) 719, 1058
Tru9I TTAA 2 cut(s) 719, 1058
TseI GCWGC 4 cut(s) 115, 129, 212, 499
TspDTI ATGAA 3 cut(s) 669, 1087, 1115
TspMI CCCGGG 1 cut(s) 303
Tth111I GACNNNGTC 1 cut(s) 857
VspI ATTAAT 1 cut(s) 1058
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 3 cut(s) 562, 628, 866
XhoI CTCGAG 2 cut(s) 345, 1091
XmaI CCCGGG 1 cut(s) 303
XmaJI CCTAGG 1 cut(s) 154
XmnI GAANNNNTTC 2 cut(s) 277, 946
XspI CTAG 6 cut(s) 155, 330, 978, 1119, 1134, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.