Rorug04G0025600
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0031218
Physical Location & Seq
Reverse (-)
3529596 .. 3530668
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0025600.1

Sequence Viewer

Length: 375 bp
ATGGCCGCAATCAGTCTCCGGAAGGGCAACACCCGGCTGCCGCCGGAAGTGAACCGGGTCCTGTACGTCCGGAACCTCCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAATACGGCGCGATACGGCAGATACGTATAGGTACGAACAAGGACACCAGGGGCACGGCGTACGTGGTGTACGAGGACATCTACGACGCGAAGACGGCGGTGGACCATCTCTCCGGGTTCAACGTGGCGAACCGGTACCTGATCGTGCTGTATTACCAGCAGGCCAAGATGGGGAAGAGGTTTGATCAGAGGAAGAAGGAGGAGGAGATCGCTAAGATGCAGGAGAAGTACGGCGTCTCCACTAAAGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

124

Amino Acids

14.41

Weight (kDa)

9.57

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_5 PF13893 17 - 97 7.8e-07 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1 PF00076 21 - 87 7e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031218)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002636.1_g000027
rosa_rugosa Rorug04G0025600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccII CGCG 2 cut(s) 131, 209
AccIII TCCGGA 2 cut(s) 18, 69
AciI CCGC 3 cut(s) 6, 41, 218
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 7 cut(s) 65, 107, 154, 182, 191, 257, 350
AfiI CCNNNNNNNGG 1 cut(s) 291
AgeI ACCGGT 1 cut(s) 252
AgsI TTSAA 2 cut(s) 85, 241
AjnI CCWGG 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 20, 361
Ama87I CYCGRG 1 cut(s) 91
Aor13HI TCCGGA 2 cut(s) 18, 69
AoxI GGCC 2 cut(s) 3, 282
ApeKI GCWGC 1 cut(s) 37
AsiGI ACCGGT 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 58, 223
AsuC2I CCSGG 3 cut(s) 34, 56, 235
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 2 cut(s) 58, 223
BaeGI GKGCMC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 98, 130
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 24
BccI CCATC 2 cut(s) 234, 283
BceAI ACGGC 5 cut(s) 142, 152, 192, 231, 367
BciT130I CCWGG 1 cut(s) 169
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 3 cut(s) 34, 56, 235
BcoDI GTCTC 2 cut(s) 20, 361
BisI GCNGC 3 cut(s) 6, 38, 41
BlsI GCNGC 3 cut(s) 7, 39, 42
Bme1390I CCNGG 4 cut(s) 34, 56, 169, 235
Bme18I GGWCC 2 cut(s) 58, 223
BmeT110I CYCGRG 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 58, 223
BmiI GGNNCC 3 cut(s) 59, 74, 257
BmrFI CCNGG 4 cut(s) 34, 56, 169, 235
BmsI GCATC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 218
BpuMI CCSGG 3 cut(s) 34, 56, 235
BsaAI YACGTR 2 cut(s) 146, 184
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 3 cut(s) 18, 69, 252
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 341, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 1 cut(s) 252
BseAI TCCGGA 2 cut(s) 18, 69
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 291
BseRI GAGGAG 3 cut(s) 113, 335, 338
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 2 cut(s) 131, 209
BshFI GGCC 2 cut(s) 5, 284
BshNI GGYRCC 1 cut(s) 255
BshTI ACCGGT 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 7 cut(s) 19, 34, 44, 55, 70, 234, 253
BsiWI CGTACG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 20, 361
BsmBI CGTCTC 1 cut(s) 361
BsnI GGCC 2 cut(s) 5, 284
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 176
Bsp13I TCCGGA 2 cut(s) 18, 69
Bsp143I GATC 3 cut(s) 261, 304, 327
BspACI CCGC 3 cut(s) 6, 41, 218
BspANI GGCC 2 cut(s) 5, 284
BspEI TCCGGA 2 cut(s) 18, 69
BspFNI CGCG 2 cut(s) 131, 209
BspLI GGNNCC 3 cut(s) 59, 74, 257
BspT107I GGYRCC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 261, 304, 327
BssNI GRCGYC 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 290
BstACI GRCGYC 1 cut(s) 354
BstBAI YACGTR 2 cut(s) 146, 184
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 333
BstFNI CGCG 2 cut(s) 131, 209
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 3 cut(s) 264, 307, 330
BstMAI GTCTC 2 cut(s) 20, 361
BstMBI GATC 3 cut(s) 261, 304, 327
BstMWI GCNNNNNNNGC 2 cut(s) 126, 215
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 4 cut(s) 32, 54, 167, 233
BstSLI GKGCMC 1 cut(s) 176
BstSNI TACGTA 1 cut(s) 146
BstUI CGCG 2 cut(s) 131, 209
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 2 cut(s) 5, 284
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 58, 223
CseI GACGC 2 cut(s) 215, 343
Csp6I GTAC 7 cut(s) 64, 106, 153, 181, 190, 256, 349
CspAI ACCGGT 1 cut(s) 252
CviJI RGCY 3 cut(s) 5, 37, 284
CviKI_1 RGCY 3 cut(s) 5, 37, 284
CviQI GTAC 7 cut(s) 64, 106, 153, 181, 190, 256, 349
DdeI CTNAG 1 cut(s) 333
DpnI GATC 3 cut(s) 263, 306, 329
DpnII GATC 3 cut(s) 261, 304, 327
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco105I TACGTA 1 cut(s) 146
Eco47I GGWCC 2 cut(s) 58, 223
Eco88I CYCGRG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 361
FaiI YATR 1 cut(s) 149
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 6, 38, 41
Fsp4HI GCNGC 3 cut(s) 6, 38, 41
GlaI GCGC 1 cut(s) 130
GluI GCNGC 3 cut(s) 6, 38, 41
HaeIII GGCC 2 cut(s) 5, 284
HapII CCGG 7 cut(s) 19, 34, 44, 55, 70, 234, 253
HgaI GACGC 2 cut(s) 215, 343
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 354
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HpaII CCGG 7 cut(s) 19, 34, 44, 55, 70, 234, 253
Hpy166II GTNNAC 3 cut(s) 52, 190, 223
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 3 cut(s) 19, 70, 91
Hpy8I GTNNAC 3 cut(s) 52, 190, 223
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 16, 310
HpyCH4IV ACGT 4 cut(s) 66, 145, 183, 243
HpyCH4V TGCA 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 215
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 4 cut(s) 66, 145, 183, 243
Hsp92I GRCGYC 1 cut(s) 354
HspAI GCGC 1 cut(s) 129
Kpn2I TCCGGA 2 cut(s) 18, 69
KpnI GGTACC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 261, 304, 327
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 327
MaeII ACGT 4 cut(s) 66, 145, 183, 243
MalI GATC 3 cut(s) 263, 306, 329
MboI GATC 3 cut(s) 261, 304, 327
MboII GAAGA 4 cut(s) 106, 223, 307, 325
MhlI GDGCHC 1 cut(s) 176
MnlI CCTC 7 cut(s) 86, 91, 187, 291, 303, 313, 316
MroI TCCGGA 2 cut(s) 18, 69
MspI CCGG 7 cut(s) 19, 34, 44, 55, 70, 234, 253
MspR9I CCNGG 4 cut(s) 34, 56, 169, 235
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 2 cut(s) 131, 209
MwoI GCNNNNNNNGC 2 cut(s) 126, 215
NciI CCSGG 3 cut(s) 34, 56, 235
NdeII GATC 3 cut(s) 261, 304, 327
NlaIV GGNNCC 3 cut(s) 59, 74, 257
PaeR7I CTCGAG 1 cut(s) 91
PcsI WCGNNNNNNNCGW 2 cut(s) 142, 189
Pfl23II CGTACG 1 cut(s) 180
PinAI ACCGGT 1 cut(s) 252
PkrI GCNGC 3 cut(s) 7, 39, 42
Ppu21I YACGTR 2 cut(s) 146, 184
PpuMI RGGWCCY 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspLI CGTACG 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 59, 74, 257
PspPI GGNCC 2 cut(s) 58, 223
PspPPI RGGWCCY 1 cut(s) 58
RsaI GTAC 7 cut(s) 65, 107, 154, 182, 191, 257, 350
RsaNI GTAC 7 cut(s) 64, 106, 153, 181, 190, 256, 349
SatI GCNGC 3 cut(s) 6, 38, 41
Sau3AI GATC 3 cut(s) 261, 304, 327
Sau96I GGNCC 2 cut(s) 58, 223
ScrFI CCNGG 4 cut(s) 34, 56, 169, 235
SduI GDGCHC 1 cut(s) 176
SetI ASST 8 cut(s) 69, 78, 148, 154, 186, 246, 261, 302
SfaNI GCATC 1 cut(s) 327
Sfr274I CTCGAG 1 cut(s) 91
SinI GGWCC 2 cut(s) 58, 223
SlaI CTCGAG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SnaBI TACGTA 1 cut(s) 146
SsiI CCGC 3 cut(s) 6, 41, 218
StyD4I CCNGG 4 cut(s) 32, 54, 167, 233
TaiI ACGT 4 cut(s) 69, 148, 186, 246
TaqI TCGA 1 cut(s) 92
TauI GCSGC 2 cut(s) 8, 43
TseI GCWGC 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 58, 223
XhoI CTCGAG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.