Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0021365

Physical Location & Seq

Genomic Coordinates Reverse (-)

16258503 .. 16259357

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0104800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTGTGGGGCTACCAAACATTGCTCATTTTGATCGGGTTAGGCGATCTGGTGGTCTGGCTCTTCTATGGGATGATTCTGTATCTGTTTCGGTACGAACGGTGAACTACTTTTTCATTGATGCTGATATGAAGGGGCCGTCTGATGTGCAATGGCGCTTCACAGGTTTTTATGGACATCCGGAAACGGGTCAGCGCCATTTATCTTGGGATCTCCTTCGTTCTTTGGCCAGACGTTCGTCGGAGAAGTGGGTGGTGGCAGGTGATTTTAATGAGATCCTAGGGTTAGGGGAGAAATCTGGAGGACAGATTCGGAGTCTACAACAAATGGATGCCTTTCGTCAAGCCCTTTTGGACTGCAATCTCACAGATTTAGGGGCAGCAGGGGGACTCTTTACTTGGAGTGACGCACACACAAAGGAACGTCTTGACAGGGGTGTATCTACACCTGCATGGCTGTCACAGTTTGGATTCTCTAGAGTTATTAATCTGCATCCAAGTAGATCAGATCATGTGCCTTTACTGTTGGAAGTTCGGAAGGATCAACCGGTGTATTTTGGTGGCAGACGAAGGTTCCGGTTTGAAGAGATGTGGTGCTCTCATGAGTCCTTTTCACAGGCGGTGGAGGAAGCTTGGACTATACCACAAGATGGTGGTCCGATGGTGCAGATATGCAGGAAACTTAAAGACACGGGGAGCTTTCTTCTAGCCTGGGAAAGTTATGCAGGAAAATACCATTACATCCAAACAAGTATTGTTATTAATTATAAAGCTACTATGAATGAACGAAAAAGTACTATCAATGAACAGAAAATCTACTGTGATTCTTCCGGAAAATTATTGTCAATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

284

Amino Acids

32.28

Weight (kDa)

8.31

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	12 - 150	3.6e-09	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021365)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0168501
rosa_roxburghii	Rroxscaffold_6G00395990
rosa_rugosa	Rorug04G0104800 Rorug04G0104900
rosa_samantha	Rh5CG531600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AarI	CACCTGC	2 cut(s)	251, 457
Acc36I	ACCTGC	2 cut(s)	251, 457
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccI	GTMKAC	1 cut(s)	319
AccIII	TCCGGA	2 cut(s)	181, 830
AciI	CCGC	1 cut(s)	620
AclWI	GGATC	3 cut(s)	219, 271, 549
AcoI	YGGCCR	1 cut(s)	228
AfaI	GTAC	2 cut(s)	96, 796
AfiI	CCNNNNNNNGG	2 cut(s)	188, 650
AgeI	ACCGGT	1 cut(s)	547
AgsI	TTSAA	1 cut(s)	584
AjnI	CCWGG	1 cut(s)	710
AluBI	AGCT	3 cut(s)	632, 699, 773
AluI	AGCT	3 cut(s)	632, 699, 773
Alw21I	GWGCWC	1 cut(s)	599
AlwI	GGATC	3 cut(s)	219, 271, 549
Aor13HI	TCCGGA	2 cut(s)	181, 830
AoxI	GGCC	2 cut(s)	137, 228
ApeKI	GCWGC	1 cut(s)	380
AseI	ATTAAT	2 cut(s)	486, 762
AsiGI	ACCGGT	1 cut(s)	547
AspA2I	CCTAGG	1 cut(s)	280
AspLEI	GCGC	2 cut(s)	159, 198
AspS9I	GGNCC	2 cut(s)	137, 656
AsuHPI	GGTGA	2 cut(s)	115, 275
AvaII	GGWCC	1 cut(s)	656
AvrII	CCTAGG	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	599
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	2 cut(s)	644, 655
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	712
BfaI	CTAG	3 cut(s)	281, 477, 707
BfoI	RGCGCY	2 cut(s)	160, 199
BfuAI	ACCTGC	2 cut(s)	251, 457
BisI	GCNGC	1 cut(s)	381
BlnI	CCTAGG	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	796
Bme1390I	CCNGG	1 cut(s)	712
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	137, 656
BmiI	GGNNCC	2 cut(s)	138, 575
BmrFI	CCNGG	1 cut(s)	712
BmsI	GCATC	3 cut(s)	112, 322, 502
BoxI	GACNNNNGTC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	280, 711
BsaWI	WCCGGW	4 cut(s)	181, 547, 576, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 650
Bse118I	RCCGGY	1 cut(s)	547
Bse3DI	GCAATG	2 cut(s)	21, 158
BseAI	TCCGGA	2 cut(s)	181, 830
BseBI	CCWGG	1 cut(s)	712
BseDI	CCNNGG	2 cut(s)	280, 711
BseGI	GGATG	5 cut(s)	79, 178, 337, 493, 741
BseLI	CCNNNNNNNGG	2 cut(s)	188, 650
BseMI	GCAATG	2 cut(s)	21, 158
BseXI	GCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	686
BshFI	GGCC	2 cut(s)	139, 230
BshTI	ACCGGT	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	599
BsiSI	CCGG	4 cut(s)	182, 548, 577, 831
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	188, 650
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	139, 230
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp13I	TCCGGA	2 cut(s)	181, 830
Bsp143I	GATC	7 cut(s)	34, 47, 211, 276, 503, 508, 541
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	2 cut(s)	139, 230
BspEI	TCCGGA	2 cut(s)	181, 830
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	138, 575
BspMI	ACCTGC	2 cut(s)	251, 457
BspPI	GGATC	3 cut(s)	219, 271, 549
BspQI	GCTCTTC	1 cut(s)	69
BsrDI	GCAATG	2 cut(s)	21, 158
BsrFI	RCCGGY	1 cut(s)	547
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	280, 711
BssMI	GATC	7 cut(s)	34, 47, 211, 276, 503, 508, 541
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	712
Bst4CI	ACNGT	4 cut(s)	103, 465, 525, 821
Bst6I	CTCTTC	2 cut(s)	69, 579
BstF5I	GGATG	5 cut(s)	79, 178, 337, 493, 741
BstH2I	RGCGCY	2 cut(s)	160, 199
BstHHI	GCGC	2 cut(s)	159, 198
BstKTI	GATC	7 cut(s)	37, 50, 214, 279, 506, 511, 544
BstMBI	GATC	7 cut(s)	34, 47, 211, 276, 503, 508, 541
BstNI	CCWGG	1 cut(s)	712
BstPAI	GACNNNNGTC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	710
BstV1I	GCAGC	1 cut(s)	392
BstX2I	RGATCY	2 cut(s)	211, 276
BstYI	RGATCY	2 cut(s)	211, 276
BsuRI	GGCC	2 cut(s)	139, 230
BtsCI	GGATG	5 cut(s)	79, 178, 337, 493, 741
BveI	ACCTGC	2 cut(s)	251, 457
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	2 cut(s)	159, 198
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	137, 656
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	95, 795
CspAI	ACCGGT	1 cut(s)	547
CviAII	CATG	3 cut(s)	453, 512, 602
CviQI	GTAC	2 cut(s)	95, 795
DpnI	GATC	7 cut(s)	36, 49, 213, 278, 505, 510, 543
DpnII	GATC	7 cut(s)	34, 47, 211, 276, 503, 508, 541
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	69, 579
EarI	CTCTTC	2 cut(s)	69, 579
Eco130I	CCWWGG	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	710
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	456, 515, 605
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	3 cut(s)	452, 511, 601
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	5 cut(s)	86, 165, 344, 480, 728
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	281, 477, 707
GlaI	GCGC	2 cut(s)	158, 197
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	2 cut(s)	160, 199
HaeIII	GGCC	2 cut(s)	139, 230
HapII	CCGG	4 cut(s)	182, 548, 577, 831
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	2 cut(s)	159, 198
Hin1II	CATG	3 cut(s)	456, 515, 605
Hin6I	GCGC	2 cut(s)	157, 196
HinP1I	GCGC	2 cut(s)	157, 196
HindIII	AAGCTT	1 cut(s)	630
HinfI	GANTC	7 cut(s)	77, 310, 316, 390, 471, 605, 824
HpaII	CCGG	4 cut(s)	182, 548, 577, 831
HphI	GGTGA	2 cut(s)	115, 275
Hpy166II	GTNNAC	2 cut(s)	106, 320
Hpy188I	TCNGA	6 cut(s)	145, 244, 315, 508, 537, 660
Hpy188III	TCNNGA	6 cut(s)	182, 300, 428, 477, 602, 831
Hpy8I	GTNNAC	2 cut(s)	106, 320
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	127, 227, 532, 564
HpyCH4III	ACNGT	4 cut(s)	103, 465, 525, 821
HpyCH4IV	ACGT	2 cut(s)	235, 424
HpyCH4V	TGCA	7 cut(s)	151, 360, 452, 493, 667, 675, 725
HpySE526I	ACGT	2 cut(s)	235, 424
Hsp92II	CATG	3 cut(s)	456, 515, 605
HspAI	GCGC	2 cut(s)	157, 196
Kpn2I	TCCGGA	2 cut(s)	181, 830
Kzo9I	GATC	7 cut(s)	34, 47, 211, 276, 503, 508, 541
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	696
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	3 cut(s)	112, 322, 502
MaeI	CTAG	3 cut(s)	281, 477, 707
MaeII	ACGT	2 cut(s)	235, 424
MaeIII	GTNAC	2 cut(s)	404, 459
MalI	GATC	7 cut(s)	36, 49, 213, 278, 505, 510, 543
MboI	GATC	7 cut(s)	34, 47, 211, 276, 503, 508, 541
MboII	GAAGA	4 cut(s)	56, 596, 695, 819
MflI	RGATCY	2 cut(s)	211, 276
MhlI	GDGCHC	1 cut(s)	599
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	3 cut(s)	763, 836, 846
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	3 cut(s)	325, 384, 614
MmeI	TCCRAC	2 cut(s)	222, 507
MnlI	CCTC	2 cut(s)	296, 619
Mox20I	TGGCCA	1 cut(s)	230
MroI	TCCGGA	2 cut(s)	181, 830
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	5 cut(s)	270, 486, 684, 762, 853
MslI	CAYNNNNRTG	1 cut(s)	451
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	4 cut(s)	182, 548, 577, 831
MspR9I	CCNGG	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	712
NdeII	GATC	7 cut(s)	34, 47, 211, 276, 503, 508, 541
NlaIII	CATG	3 cut(s)	456, 515, 605
NlaIV	GGNNCC	2 cut(s)	138, 575
NmuCI	GTSAC	2 cut(s)	404, 459
PagI	TCATGA	1 cut(s)	601
PaqCI	CACCTGC	2 cut(s)	251, 457
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PfeI	GAWTC	4 cut(s)	77, 310, 471, 824
PflMI	CCANNNNNTGG	1 cut(s)	650
PinAI	ACCGGT	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	3 cut(s)	324, 384, 613
PpsI	GAGTC	3 cut(s)	324, 384, 613
PshAI	GACNNNNGTC	1 cut(s)	238
PshBI	ATTAAT	2 cut(s)	486, 762
PsiI	TTATAA	1 cut(s)	768
Psp6I	CCWGG	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	138, 575
PspPI	GGNCC	2 cut(s)	137, 656
PsuI	RGATCY	2 cut(s)	211, 276
RsaI	GTAC	2 cut(s)	96, 796
RsaNI	GTAC	2 cut(s)	95, 795
RseI	CAYNNNNRTG	1 cut(s)	451
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	5 cut(s)	270, 486, 684, 762, 853
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	7 cut(s)	34, 47, 211, 276, 503, 508, 541
Sau96I	GGNCC	2 cut(s)	137, 656
ScaI	AGTACT	1 cut(s)	796
SchI	GAGTC	3 cut(s)	325, 384, 614
ScrFI	CCNGG	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	599
SetI	ASST	9 cut(s)	169, 238, 265, 427, 451, 575, 634, 701, 775
SfaNI	GCATC	3 cut(s)	112, 322, 502
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	451
Sse9I	AATT	3 cut(s)	763, 836, 846
SsiI	CCGC	1 cut(s)	620
SspMI	CTAG	3 cut(s)	281, 477, 707
StyD4I	CCNGG	1 cut(s)	710
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	4 cut(s)	103, 465, 525, 821
TaiI	ACGT	2 cut(s)	238, 427
TasI	AATT	3 cut(s)	763, 836, 846
TatI	WGTACW	1 cut(s)	794
TfiI	GAWTC	4 cut(s)	77, 310, 471, 824
Tru1I	TTAA	5 cut(s)	270, 486, 684, 762, 853
Tru9I	TTAA	5 cut(s)	270, 486, 684, 762, 853
TseFI	GTSAC	2 cut(s)	404, 459
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	2 cut(s)	404, 459
TspDTI	ATGAA	5 cut(s)	106, 146, 794, 798, 819
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	2 cut(s)	486, 762
XbaI	TCTAGA	1 cut(s)	476
XmaJI	CCTAGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	319
XspI	CTAG	3 cut(s)	281, 477, 707
ZrmI	AGTACT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.