Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0021365

Physical Location & Seq

Genomic Coordinates Reverse (-)

16262504 .. 16262917

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCATCGACCTGGACCTGGATTTTTTCTTCGAGAACATGTATGGCTAGTGCAGAGAATGTGGATATATTTTTGACTCATGTAGGGCTGCCATGTGCTGGGCCACCACTACCTAATACGCTGAGGGTTGAAGCCTCGCCTACGCGGCAGAACTTGGAGCAGATTATGGCTTGGGTAGGGAAAACACCAACTGCAAGTTTGTCCTTGGTGTTTGGGGCATATTCGTCGATGACGGAATCTCTGGGGCTAGCTAGGTTTTCTGGCTTACCTATAGTTAAACCAAAGCAATGCATGGAGGTGCATATCCGGCCACAGAAACCGATGGTGGCGGCAGCAGAGATAGAGGTGGTAGCAGTGGATTCTGTTGAGGGTGATTTAGTGGAGGAGGTGTTTACTGTAGGTGTATCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

137

Amino Acids

14.76

Weight (kDa)

5.31

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021365)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0168501
rosa_roxburghii	Rroxscaffold_6G00395990
rosa_rugosa	Rorug04G0104800 Rorug04G0104900
rosa_samantha	Rh5CG531600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccII	CGCG	1 cut(s)	145
AciI	CCGC	2 cut(s)	145, 329
AcoI	YGGCCR	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	18, 98
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	11, 17
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
AoxI	GGCC	2 cut(s)	101, 308
ApeKI	GCWGC	2 cut(s)	88, 332
AspS9I	GGNCC	2 cut(s)	15, 101
AsuHPI	GGTGA	1 cut(s)	383
AsuNHI	GCTAGC	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	75, 344
BccI	CCATC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciT130I	CCWGG	2 cut(s)	13, 19
BfaI	CTAG	3 cut(s)	48, 248, 252
BfmI	CTRYAG	2 cut(s)	270, 396
BglI	GCCNNNNNGGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	89, 146, 330, 333
BlsI	GCNGC	4 cut(s)	90, 147, 331, 334
Bme1390I	CCNGG	2 cut(s)	13, 19
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	15, 101
BmrFI	CCNGG	2 cut(s)	13, 19
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 98
Bse3DI	GCAATG	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	13, 19
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	18, 98
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	2 cut(s)	75, 344
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	103, 310
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	18, 98
BsnI	GGCC	2 cut(s)	103, 310
BspACI	CCGC	2 cut(s)	145, 329
BspANI	GGCC	2 cut(s)	103, 310
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	13, 19
Bst4CI	ACNGT	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	122, 408
BstFNI	CGCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 307
BstNI	CCWGG	2 cut(s)	13, 19
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	2 cut(s)	11, 17
BstSFI	CTRYAG	2 cut(s)	270, 396
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	2 cut(s)	75, 344
BsuRI	GGCC	2 cut(s)	103, 310
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	15, 101
CviAII	CATG	4 cut(s)	39, 80, 93, 292
CviJI	RGCY	9 cut(s)	47, 88, 103, 134, 170, 247, 251, 264, 310
CviKI_1	RGCY	9 cut(s)	47, 88, 103, 134, 170, 247, 251, 264, 310
DdeI	CTNAG	2 cut(s)	122, 408
EaeI	YGGCCR	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	11, 17
EcoT14I	CCWWGG	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	4 cut(s)	42, 83, 96, 295
FatI	CATG	4 cut(s)	38, 79, 92, 291
Fnu4HI	GCNGC	4 cut(s)	89, 146, 330, 333
Fsp4HI	GCNGC	4 cut(s)	89, 146, 330, 333
FspBI	CTAG	3 cut(s)	48, 248, 252
GluI	GCNGC	4 cut(s)	89, 146, 330, 333
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	103, 310
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	4 cut(s)	42, 83, 96, 295
HinfI	GANTC	3 cut(s)	76, 236, 359
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188III	TCNNGA	1 cut(s)	33
Hpy8I	GTNNAC	1 cut(s)	393
Hpy99I	CGWCG	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	4 cut(s)	53, 194, 291, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 307
HpyF3I	CTNAG	2 cut(s)	122, 408
Hsp92II	CATG	4 cut(s)	42, 83, 96, 295
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	4, 25, 31, 84, 227, 246, 320
Lsp1109I	GCAGC	2 cut(s)	75, 344
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	3 cut(s)	48, 248, 252
MboII	GAAGA	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	7 cut(s)	117, 145, 289, 337, 361, 376, 379
Mph1103I	ATGCAT	1 cut(s)	293
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	296
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	13, 19
MvaI	CCWGG	2 cut(s)	13, 19
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	145, 307
NheI	GCTAGC	1 cut(s)	247
NlaIII	CATG	4 cut(s)	42, 83, 96, 295
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	42
PciI	ACATGT	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	236, 359
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	90, 147, 331, 334
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PscI	ACATGT	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	11, 17
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	2 cut(s)	11, 17
PspPI	GGNCC	2 cut(s)	15, 101
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	4 cut(s)	89, 146, 330, 333
Sau96I	GGNCC	2 cut(s)	15, 101
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	13, 19
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	270, 396
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	296
SsiI	CCGC	2 cut(s)	145, 329
SspMI	CTAG	3 cut(s)	48, 248, 252
StyD4I	CCNGG	2 cut(s)	11, 17
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	3 cut(s)	8, 32, 227
TauI	GCSGC	2 cut(s)	148, 332
TfiI	GAWTC	2 cut(s)	236, 359
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	2 cut(s)	88, 332
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	15
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	3 cut(s)	48, 248, 252
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.