Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014197

Physical Location & Seq

Genomic Coordinates Reverse (-)

18848194 .. 18848659

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0119000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGCAACAATAGCTGGTCTTTACTCAGCCACCTAAGGAGGGCTGTGAAGAAGGTAAGCTTCCTTCTAAATCTCAACATGAACCGCTGGCGAATCGCTTCCATGCTCAGCCGTTCTTCTTCCACTGTGCACCGCATAAGGAGCTTCAACGACCGGCCAGCAGGACTGACCGCAGCGAATGACTCCGATGAGACCGCGGGCTCGGAGGAGGATTCCGGGTCTTCTAGGGGATCACGTCATCTACAGAGGACCATAAGCTACCCGTCGGATCAAGATGATATCGATCAGAGAGCAGAGATGTTCATAGCTAATTTCCGGCGCCAACTTCAGATTGAAAGACAGGTCTCTTTGCAGCTGAGATACTGCAGAGGAAATAGTTTTGAAATGGCATCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0000302 GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006790 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010197 GO:0010269 GO:0016043 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071291 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP56

Protein Analysis

132

Amino Acids

15.12

Weight (kDa)

10.32

Isoelectric Point (pI)

73.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF761	PF05553	91 - 122	1e-10	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23800 AT3G23800 AT4G14030 AT4G14030 AT4G14040
fragaria_vesca	FvH4_4g13170
malus_domestica	MD04G1018500.v1.1
prunus_persica	Prupe.1G167300_v2.0.a1 Prupe.1G167300_v2.0.a1
pyrus_communis	pycom04g01480
rosa_chinensis	RchiOBHm_Chr4g0413261
rosa_laevigata	RLG00000008227
rosa_multiflora	Rmu_sc0000717.1_g000003
rosa_roxburghii	Rroxscaffold_5G00357230
rosa_rugosa	Rorug04G0119000
rosa_samantha	Rh4AG178900
rosa_wichuraiana	Rw4G014880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AccII	CGCG	1 cut(s)	197
AciI	CCGC	5 cut(s)	85, 133, 171, 195, 197
AclWI	GGATC	2 cut(s)	238, 276
AcoI	YGGCCR	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	148, 335, 383
AjiI	CACGTC	1 cut(s)	236
AluBI	AGCT	6 cut(s)	15, 60, 144, 258, 308, 355
AluI	AGCT	6 cut(s)	15, 60, 144, 258, 308, 355
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	185, 349
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	238, 276
AoxI	GGCC	1 cut(s)	155
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	173, 352
Asp700I	GAANNNNTTC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	203
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	185, 364
BceAI	ACGGC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	185, 349
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	242, 364
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	2 cut(s)	174, 353
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	2 cut(s)	175, 354
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	2 cut(s)	185, 349
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	153
Bse21I	CCTNAGG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	40, 121, 347
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	185, 364
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	318
BshVI	ATCGAT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	154, 216, 316
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	185, 349
BsnI	GGCC	1 cut(s)	157
Bso31I	GGTCTC	2 cut(s)	185, 349
Bsp1286I	GDGCHC	2 cut(s)	132, 203
Bsp143I	GATC	3 cut(s)	230, 268, 283
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	5 cut(s)	85, 133, 171, 195, 197
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	3 cut(s)	39, 120, 348
BspDI	ATCGAT	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	368
BspPI	GGATC	2 cut(s)	238, 276
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	2 cut(s)	185, 349
BsrFI	RCCGGY	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	230, 268, 283
BssNI	GRCGYC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	319
BstC8I	GCNNGC	3 cut(s)	89, 159, 199
BstDEI	CTNAG	4 cut(s)	26, 35, 107, 356
BstDSI	CCRYGG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	3 cut(s)	233, 271, 286
BstMAI	GTCTC	2 cut(s)	185, 349
BstMBI	GATC	3 cut(s)	230, 268, 283
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 141
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	2 cut(s)	242, 364
BstSLI	GKGCMC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	185, 364
BstV2I	GAAGAC	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	157
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	3 cut(s)	89, 159, 199
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	249
Cfr42I	CCGCGG	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	282
CviAII	CATG	2 cut(s)	79, 103
DdeI	CTNAG	4 cut(s)	26, 35, 107, 356
DinI	GGCGCC	1 cut(s)	320
DpnI	GATC	3 cut(s)	232, 270, 285
DpnII	GATC	3 cut(s)	230, 268, 283
EaeI	YGGCCR	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	2 cut(s)	185, 349
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	203
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
FaeI	CATG	2 cut(s)	82, 106
FaiI	YATR	5 cut(s)	80, 104, 137, 254, 305
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	2 cut(s)	78, 102
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	174, 353
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	174, 353
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	2 cut(s)	174, 353
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	3 cut(s)	154, 216, 316
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	2 cut(s)	82, 106
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	3 cut(s)	93, 182, 212
HpaII	CCGG	3 cut(s)	154, 216, 316
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	187, 205, 268, 288, 330
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	46, 74
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	130, 352, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 141
HpyF3I	CTNAG	4 cut(s)	26, 35, 107, 356
HpySE526I	ACGT	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	2 cut(s)	82, 106
HspAI	GCGC	1 cut(s)	319
KasI	GGCGCC	1 cut(s)	318
KspI	CCGCGG	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	230, 268, 283
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	7 cut(s)	73, 147, 167, 171, 229, 326, 329
Lsp1109I	GCAGC	2 cut(s)	185, 364
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	235
MalI	GATC	3 cut(s)	232, 270, 285
MboI	GATC	3 cut(s)	230, 268, 283
MboII	GAAGA	4 cut(s)	61, 108, 111, 213
MhlI	GDGCHC	2 cut(s)	132, 203
MluCI	AATT	1 cut(s)	310
Mly113I	GGCGCC	1 cut(s)	319
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	5 cut(s)	33, 199, 202, 240, 362
MroXI	GAANNNNTTC	1 cut(s)	97
MspA1I	CMGCKG	3 cut(s)	87, 197, 355
MspI	CCGG	3 cut(s)	154, 216, 316
MspR9I	CCNGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	12, 141
NarI	GGCGCC	1 cut(s)	319
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	3 cut(s)	230, 268, 283
NlaIII	CATG	2 cut(s)	82, 106
NlaIV	GGNNCC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	93, 212
PkrI	GCNGC	2 cut(s)	175, 354
PleI	GAGTC	1 cut(s)	176
PluTI	GGCGCC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	355
SacII	CCGCGG	1 cut(s)	198
SatI	GCNGC	2 cut(s)	174, 353
Sau3AI	GATC	3 cut(s)	230, 268, 283
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	132, 203
SfcI	CTRYAG	2 cut(s)	242, 364
SfoI	GGCGCC	1 cut(s)	320
Sfr303I	CCGCGG	1 cut(s)	198
SgrBI	CCGCGG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	5 cut(s)	85, 133, 171, 195, 197
SspDI	GGCGCC	1 cut(s)	318
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	93, 212
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	173, 352
TspDTI	ATGAA	2 cut(s)	95, 292
TspRI	CASTG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.