Rorug04G0273500

fructose-bisphosphate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015859
Physical Location & Seq
Reverse (-)
44609152 .. 44609634
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0273500.1

Sequence Viewer

Length: 483 bp
ATGGGTGTGTTCACTTACGAAACCGAGTTCACCTCTGTCATCCCACCACCAAGACTGTACAAGGCCTTTGTCCTTGATGCTGATAACCTCATCCCCAAGATTGCACCACAGGCTGTGAAGAGTGCCGAAATTGTTCAAGGTGATGGAGGTGTTGGAACCATTAAGAAGATTCACCTCGGTGAAGGAAGTGAATTCAGCTATGTGAAGCATCAGATTGATGGACTTGACAAAGACAATTTTGTGTACAACTACAGTATAATTGAAGGTGATGCTATCGGAGACAAAGTTGAGAAAATCTCTTACGAGATTAAGTTGGTGGCTTCTCCAAGTGGAGGATCCATCATCAAAAGCACCAGCCACTACCATTGCAAAGGTGAGGTTGAGATCAAGGAGGAGCACGTCAAGGCTGGAAAAGAAAGAGCCGCTGGTCTGTTCAAGATCATTGAGAACCACCTTTTGGCCCATCCCGAGGAATACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004332 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010035 GO:0010038 GO:0010287 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Glycolytic

Protein Analysis

160

Amino Acids

17.62

Weight (kDa)

5.63

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 155 1.1e-22 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01140
fragaria_vesca FvH4_4g26450 FvH4_4g26450
malus_domestica MD13G1033400.v1.1 MD16G1035200.v1.1
prunus_persica Prupe.1G319500_v2.0.a1
pyrus_communis pycom13g02880 pycom16g03000
rosa_chinensis RchiOBHm_Chr4g0434081
rosa_laevigata RLG00000006702
rosa_multiflora Rmu_sc0000352.1_g000030
rosa_roxburghii Rroxscaffold_5G00375490
rosa_rugosa Rorug04G0273500
rosa_samantha Rh4AG329100
rosa_wichuraiana Rw4G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 1 cut(s) 423
AclWI GGATC 2 cut(s) 330, 343
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 2 cut(s) 59, 245
AfiI CCNNNNNNNGG 3 cut(s) 332, 457, 469
AgsI TTSAA 3 cut(s) 137, 263, 436
AjiI CACGTC 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 2 cut(s) 330, 343
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 2 cut(s) 63, 459
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 460
AsuHPI GGTGA 6 cut(s) 22, 152, 164, 191, 278, 386
AvaI CYCGRG 1 cut(s) 467
BamHI GGATCC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 399
BccI CCATC 4 cut(s) 137, 212, 347, 471
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 467
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 2 cut(s) 157, 337
BmsI GCATC 3 cut(s) 67, 217, 259
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaJI CCNNGG 2 cut(s) 175, 468
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 457, 469
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 175, 468
BseGI GGATG 3 cut(s) 39, 90, 463
BseLI CCNNNNNNNGG 3 cut(s) 332, 457, 469
BseMI GCAATG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 407
BshFI GGCC 2 cut(s) 65, 461
BsiHKAI GWGCWC 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 467
BslI CCNNNNNNNGG 3 cut(s) 332, 457, 469
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 2 cut(s) 65, 461
BsoBI CYCGRG 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 399
Bsp1407I TGTACA 2 cut(s) 57, 243
Bsp143I GATC 3 cut(s) 335, 384, 438
BspACI CCGC 1 cut(s) 423
BspANI GGCC 2 cut(s) 65, 461
BspLI GGNNCC 2 cut(s) 157, 337
BspPI GGATC 2 cut(s) 330, 343
BsrDI GCAATG 1 cut(s) 364
BsrGI TGTACA 2 cut(s) 57, 243
BssECI CCNNGG 2 cut(s) 175, 468
BssMI GATC 3 cut(s) 335, 384, 438
Bst4CI ACNGT 2 cut(s) 57, 254
Bst6I CTCTTC 1 cut(s) 113
BstAUI TGTACA 2 cut(s) 57, 243
BstF5I GGATG 3 cut(s) 39, 90, 463
BstKTI GATC 3 cut(s) 338, 387, 441
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 3 cut(s) 335, 384, 438
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 2 cut(s) 65, 461
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 3 cut(s) 39, 90, 463
Cfr13I GGNCC 1 cut(s) 460
Csp6I GTAC 2 cut(s) 58, 244
CspCI CAANNNNNGTGG 2 cut(s) 347, 382
CviJI RGCY 8 cut(s) 65, 113, 198, 320, 357, 407, 422, 461
CviKI_1 RGCY 8 cut(s) 65, 113, 198, 320, 357, 407, 422, 461
CviQI GTAC 2 cut(s) 58, 244
DpnI GATC 3 cut(s) 337, 386, 440
DpnII GATC 3 cut(s) 335, 384, 438
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 191
FaiI YATR 2 cut(s) 201, 257
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 3 cut(s) 26, 77, 450
Fsp4HI GCNGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 423
HaeIII GGCC 2 cut(s) 65, 461
HinfI GANTC 1 cut(s) 169
HphI GGTGA 6 cut(s) 22, 152, 164, 191, 278, 386
Hpy166II GTNNAC 3 cut(s) 12, 30, 244
Hpy188I TCNGA 2 cut(s) 213, 278
Hpy188III TCNNGA 2 cut(s) 436, 467
Hpy8I GTNNAC 3 cut(s) 12, 30, 244
HpyAV CCTTC 2 cut(s) 176, 257
HpyCH4III ACNGT 2 cut(s) 57, 254
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 104, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 399
Kzo9I GATC 3 cut(s) 335, 384, 438
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 4 cut(s) 95, 367, 393, 411
LweI GCATC 3 cut(s) 67, 217, 259
MaeII ACGT 1 cut(s) 399
MalI GATC 3 cut(s) 337, 386, 440
MboI GATC 3 cut(s) 335, 384, 438
MboII GAAGA 2 cut(s) 130, 178
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 4 cut(s) 129, 191, 235, 258
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 8 cut(s) 43, 98, 140, 185, 326, 370, 385, 463
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 162, 309
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 3 cut(s) 335, 384, 438
NlaIV GGNNCC 2 cut(s) 157, 337
OliI CACNNNNGTG 1 cut(s) 177
PceI AGGCCT 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 157, 337
PspPI GGNCC 1 cut(s) 460
PsuI RGATCY 1 cut(s) 335
RsaI GTAC 2 cut(s) 59, 245
RsaNI GTAC 2 cut(s) 58, 244
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 2 cut(s) 162, 309
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 3 cut(s) 335, 384, 438
Sau96I GGNCC 1 cut(s) 460
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 3 cut(s) 67, 217, 259
SfcI CTRYAG 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 4 cut(s) 129, 191, 235, 258
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 1 cut(s) 423
StuI AGGCCT 1 cut(s) 65
TaaI ACNGT 2 cut(s) 57, 254
TaiI ACGT 1 cut(s) 402
TasI AATT 4 cut(s) 129, 191, 235, 258
TatI WGTACW 2 cut(s) 57, 243
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 162, 309
Tru9I TTAA 2 cut(s) 162, 309
Van91I CCANNNNNTGG 1 cut(s) 457
XapI RAATTY 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.