Rorug04G0382000

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007958
Physical Location & Seq
Reverse (-)
55267543 .. 55270489
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0382000.1

Sequence Viewer

Length: 1551 bp
ATGAGTTCTTCAGGAGGCCTAGTCATCATCATTTCAAGTTTTTTGTGTCTGTTCTGTTTGGTAGCTCTGCTCTTCAAGATCTTTCACAAAATATGGTGGACTCCGAATCGCATACAGACGTTGATGGCTTCACAGGGAATCAGAGGCCCTCCTTACAGACTTATCCATGGAAACACGAAAGAAATCTCCAACATGTACAAGGAAGCCATGAGCAGACCCTTAAGTTTATCACACAACATATTTGCTTATGTTCAGCCTCATGTTCACTCATGGAGCAATATATATGGGAAGAATTATCTCCAATGGTTCGGTGCCCGAGCTCAGTTGGTAATTCGAGAACCTGAGTTATGCAAACAGATACTGAACAACAAAGATGGAGCTTATCCAAAAAAACCGCCTGAAGAATATGCAAAGAAGCTGTTAGGATATGGCCTTGTAACAGCTGAAGCAGAAAATTGGGCAAAATTGAGAAAGATTTCCAACCATGCCTTCCATGGAGAGAGCTTAAAAACTATGATTCCAGATATGATAGCTGGTGCTGAGATAATGCTTGAAAGGTGGGAAAGTTATGAAGGAAAAGAGATTGAGGTAGTTGAAGAATTTAGGTTATTCACTTCAGATGTGATTTCCAGGACAGCATTTGGCAGCAGCTACTTGGAAGGACAGCACATTTTTGAAATGTTGATGAAGTTGGCCTTGTTATTATTCAGAAATTCTCTCAAAATCAAGGTTCCTGGTATCAGCAAGCTTTTTGACACCAGTGATGAAATCGAATCAGAGAAACTCGAGAAAGGAATACGTGACTCCATAATAGAGCTTGTTAAGAAAAGAGAACGGAAGGCAACTAGTGGAGAAGAAGATAGCTTTGGGAGTGATTTTCTTGGATTACTTTTAAAGGCTCATCATGATGCCAATCAGAACCAGAGGATTTCGGTGGATGATTTAGTTGACGATTGCAAGACATTTTACTTTGCGGGGCAAGAAACCACTAATACATTGCTTGCTTGGACTGTTTTTCTCCTAGCAGTTCATACAGATTGGCAAGAGGAAGCAAGAAAGGAGATCTTACAATTATTTGGAAAACAGAATCCAAATCCGGATGGCATTTCCAAACTTAAAATCATGAGTATGATCCTCAATGAGTCTCTAAGGTTATATCCTCCTGCTGTTGCCATTCCACGGAGCACTGGAAGGGAAGTTAGACTAGGAAAGCTCATTGTCCCTGCTAATGTTGATCTGCTCGTCTCAGTTCTAGCACCTCACCATGAACCTCAATTTTGGGGACCAGATGTGCATCTTTTCAAGCCTGAGAGATTCTCAGGGGGCGTTGCTAAAGCTACTATCAATAATGTAGGTGCTTTCACGCCGTTTGGACTGGGACCTCGAACTTGTGTGGGCTTGAACTTCGCAATCACTGAAGCTAAGATTGCCTTGTCGATGATTCTACAACGCTACTCCTTCACTCTTTCCCCGGCTTATATCCACTCCCCCTATCAGAATATCACACTCCGGCCACAACATGGACTTCAAGTAATGCTACAACCATTGTGA

Protein Analysis

516

Amino Acids

58.39

Weight (kDa)

8.7

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 89 - 491 1.4e-71 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 1520
AccIII TCCGGA 1 cut(s) 1096
AciI CCGC 2 cut(s) 395, 974
AclWI GGATC 1 cut(s) 1126
AcoI YGGCCR 1 cut(s) 1511
AcsI RAATTY 2 cut(s) 599, 712
AcuI CTGAAG 4 cut(s) 420, 465, 600, 1437
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 1179, 1520
AflII CTTAAG 1 cut(s) 220
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 8 cut(s) 36, 76, 554, 596, 677, 1303, 1402, 1529
AhlI ACTAGT 1 cut(s) 845
AjnI CCWGG 2 cut(s) 629, 733
AjuI GAANNNNNNNTTGG 4 cut(s) 473, 505, 849, 881
Alw21I GWGCWC 2 cut(s) 322, 1187
Alw26I GTCTC 2 cut(s) 1149, 1249
AlwI GGATC 1 cut(s) 1126
AlwNI CAGNNNCTG 1 cut(s) 361
Ama87I CYCGRG 2 cut(s) 315, 785
Aor13HI TCCGGA 1 cut(s) 1096
AoxI GGCC 5 cut(s) 16, 145, 430, 693, 1511
ApeKI GCWGC 2 cut(s) 645, 648
ApoI RAATTY 2 cut(s) 599, 712
Asp700I GAANNNNTTC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 146, 1283, 1379
AsuC2I CCSGG 1 cut(s) 1472
AsuHPI GGTGA 1 cut(s) 1253
AvaI CYCGRG 2 cut(s) 315, 785
AvaII GGWCC 2 cut(s) 1283, 1379
BaeGI GKGCMC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 322, 1187
BbvI GCAGC 2 cut(s) 657, 660
BccI CCATC 3 cut(s) 118, 368, 1094
BceAI ACGGC 1 cut(s) 1351
BciT130I CCWGG 2 cut(s) 631, 735
BcnI CCSGG 1 cut(s) 1472
BcoDI GTCTC 2 cut(s) 1149, 1249
BcuI ACTAGT 1 cut(s) 845
BfaI CTAG 5 cut(s) 20, 846, 1022, 1205, 1253
BfrI CTTAAG 1 cut(s) 220
BglII AGATCT 2 cut(s) 78, 1062
BisI GCNGC 2 cut(s) 646, 649
BlsI GCNGC 2 cut(s) 647, 650
Bme1390I CCNGG 3 cut(s) 631, 735, 1472
Bme18I GGWCC 2 cut(s) 1283, 1379
BmeT110I CYCGRG 2 cut(s) 315, 785
BmgT120I GGNCC 3 cut(s) 146, 1283, 1379
BmiI GGNNCC 4 cut(s) 313, 732, 1284, 1380
BmrFI CCNGG 3 cut(s) 631, 735, 1472
BmrI ACTGGG 1 cut(s) 1385
BmsI GCATC 2 cut(s) 898, 1303
BmuI ACTGGG 1 cut(s) 1385
BplI GAGNNNNNCTC 2 cut(s) 1301, 1333
BpuMI CCSGG 1 cut(s) 1472
BsaAI YACGTR 1 cut(s) 800
BsaBI GATNNNNATC 2 cut(s) 912, 1293
BsaJI CCNNGG 4 cut(s) 166, 493, 1178, 1470
BsaWI WCCGGW 1 cut(s) 1096
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 2 cut(s) 1179, 1520
Bse1I ACTGG 3 cut(s) 759, 1192, 1380
Bse3DI GCAATG 1 cut(s) 995
Bse8I GATNNNNATC 2 cut(s) 912, 1293
BseAI TCCGGA 1 cut(s) 1096
BseBI CCWGG 2 cut(s) 631, 735
BseDI CCNNGG 4 cut(s) 166, 493, 1178, 1470
BseGI GGATG 2 cut(s) 943, 1105
BseJI GATNNNNATC 2 cut(s) 912, 1293
BseLI CCNNNNNNNGG 2 cut(s) 1179, 1520
BseMI GCAATG 1 cut(s) 995
BseMII CTCAG 6 cut(s) 333, 335, 531, 1260, 1299, 1332
BseNI ACTGG 3 cut(s) 759, 1192, 1380
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 2 cut(s) 657, 660
BshFI GGCC 5 cut(s) 18, 147, 432, 695, 1513
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 2 cut(s) 322, 1187
BsiHKCI CYCGRG 2 cut(s) 315, 785
BsiSI CCGG 3 cut(s) 1097, 1472, 1510
BslFI GGGAC 3 cut(s) 1205, 1296, 1392
BslI CCNNNNNNNGG 2 cut(s) 1179, 1520
BsmAI GTCTC 2 cut(s) 1149, 1249
BsmBI CGTCTC 1 cut(s) 1249
BsmFI GGGAC 3 cut(s) 1205, 1296, 1392
BsnI GGCC 5 cut(s) 18, 147, 432, 695, 1513
BsoBI CYCGRG 2 cut(s) 315, 785
Bsp1286I GDGCHC 3 cut(s) 316, 322, 1187
Bsp13I TCCGGA 1 cut(s) 1096
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 4 cut(s) 78, 1062, 1131, 1234
Bsp19I CCATGG 2 cut(s) 166, 493
BspACI CCGC 2 cut(s) 395, 974
BspANI GGCC 5 cut(s) 18, 147, 432, 695, 1513
BspCNI CTCAG 6 cut(s) 334, 334, 532, 1259, 1300, 1331
BspEI TCCGGA 1 cut(s) 1096
BspHI TCATGA 2 cut(s) 904, 1122
BspLI GGNNCC 4 cut(s) 313, 732, 1284, 1380
BspPI GGATC 1 cut(s) 1126
BspQI GCTCTTC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 311
BspTI CTTAAG 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 995
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 3 cut(s) 759, 1192, 1380
BssECI CCNNGG 4 cut(s) 166, 493, 1178, 1470
BssMI GATC 4 cut(s) 78, 1062, 1131, 1234
BssT1I CCWWGG 2 cut(s) 166, 493
Bst2UI CCWGG 2 cut(s) 631, 735
Bst4CI ACNGT 1 cut(s) 1012
Bst6I CTCTTC 1 cut(s) 77
BstAFI CTTAAG 1 cut(s) 220
BstAUI TGTACA 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 800
BstC8I GCNNGC 2 cut(s) 746, 1002
BstDEI CTNAG 8 cut(s) 321, 342, 540, 1148, 1246, 1308, 1318, 1422
BstDSI CCRYGG 3 cut(s) 166, 493, 1178
BstF5I GGATG 2 cut(s) 943, 1105
BstKTI GATC 4 cut(s) 81, 1065, 1134, 1237
BstMAI GTCTC 2 cut(s) 1149, 1249
BstMBI GATC 4 cut(s) 78, 1062, 1131, 1234
BstMWI GCNNNNNNNGC 1 cut(s) 1427
BstNI CCWGG 2 cut(s) 631, 735
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 3 cut(s) 629, 733, 1470
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 657, 660
BstX2I RGATCY 2 cut(s) 78, 1062
BstYI RGATCY 2 cut(s) 78, 1062
BsuRI GGCC 5 cut(s) 18, 147, 432, 695, 1513
BtgI CCRYGG 3 cut(s) 166, 493, 1178
BtsCI GGATG 2 cut(s) 943, 1105
BtsIMutI CAGTG 3 cut(s) 766, 1185, 1413
Cac8I GCNNGC 2 cut(s) 746, 1002
CaiI CAGNNNCTG 1 cut(s) 361
CciI TCATGA 2 cut(s) 904, 1122
Cfr13I GGNCC 3 cut(s) 146, 1283, 1379
Csp6I GTAC 1 cut(s) 196
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 8 cut(s) 321, 342, 540, 1148, 1246, 1308, 1318, 1422
DpnI GATC 4 cut(s) 80, 1064, 1133, 1236
DpnII GATC 4 cut(s) 78, 1062, 1131, 1234
DraI TTTAAA 1 cut(s) 894
EaeI YGGCCR 1 cut(s) 1511
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 2 cut(s) 166, 493
Eco147I AGGCCT 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 1283, 1379
Eco53kI GAGCTC 1 cut(s) 320
Eco57I CTGAAG 4 cut(s) 420, 465, 600, 1437
Eco88I CYCGRG 2 cut(s) 315, 785
EcoICRI GAGCTC 1 cut(s) 320
EcoO109I RGGNCCY 2 cut(s) 146, 1379
EcoRII CCWGG 2 cut(s) 629, 733
EcoT14I CCWWGG 2 cut(s) 166, 493
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 166, 493
Esp3I CGTCTC 1 cut(s) 1249
FalI AAGNNNNNCTT 6 cut(s) 680, 712, 1049, 1081, 1415, 1447
FaqI GGGAC 3 cut(s) 1205, 1296, 1392
FauI CCCGC 1 cut(s) 967
Fnu4HI GCNGC 2 cut(s) 646, 649
FokI GGATG 2 cut(s) 950, 1112
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 2 cut(s) 646, 649
FspBI CTAG 5 cut(s) 20, 846, 1022, 1205, 1253
GluI GCNGC 2 cut(s) 646, 649
HaeIII GGCC 5 cut(s) 18, 147, 432, 695, 1513
HapII CCGG 3 cut(s) 1097, 1472, 1510
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HindIII AAGCTT 1 cut(s) 746
HpaII CCGG 3 cut(s) 1097, 1472, 1510
HphI GGTGA 1 cut(s) 1253
Hpy166II GTNNAC 3 cut(s) 99, 265, 949
Hpy188I TCNGA 7 cut(s) 105, 143, 619, 710, 778, 918, 1497
Hpy188III TCNNGA 8 cut(s) 12, 76, 335, 521, 787, 905, 1097, 1123
Hpy8I GTNNAC 3 cut(s) 99, 265, 949
HpyAV CCTTC 6 cut(s) 499, 566, 653, 832, 1185, 1468
HpyCH4III ACNGT 1 cut(s) 1012
HpyCH4IV ACGT 2 cut(s) 119, 799
HpyCH4V TGCA 4 cut(s) 351, 410, 957, 1294
HpyF10VI GCNNNNNNNGC 1 cut(s) 1427
HpyF3I CTNAG 8 cut(s) 321, 342, 540, 1148, 1246, 1308, 1318, 1422
HpySE526I ACGT 2 cut(s) 119, 799
Kpn2I TCCGGA 1 cut(s) 1096
Kzo9I GATC 4 cut(s) 78, 1062, 1131, 1234
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 3 cut(s) 273, 377, 1182
Lsp1109I GCAGC 2 cut(s) 657, 660
LweI GCATC 2 cut(s) 898, 1303
MaeI CTAG 5 cut(s) 20, 846, 1022, 1205, 1253
MaeII ACGT 2 cut(s) 119, 799
MaeIII GTNAC 2 cut(s) 436, 800
MalI GATC 4 cut(s) 80, 1064, 1133, 1236
MboI GATC 4 cut(s) 78, 1062, 1131, 1234
MboII GAAGA 6 cut(s) 64, 301, 413, 608, 866, 869
MflI RGATCY 2 cut(s) 78, 1062
MhlI GDGCHC 3 cut(s) 316, 322, 1187
MluCI AATT 8 cut(s) 292, 330, 454, 464, 599, 712, 1070, 1274
MlyI GAGTC 3 cut(s) 94, 797, 1151
MmeI TCCRAC 2 cut(s) 213, 504
MroI TCCGGA 1 cut(s) 1096
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 5 cut(s) 221, 506, 822, 893, 1116
MslI CAYNNNNRTG 2 cut(s) 906, 1127
MspA1I CMGCKG 1 cut(s) 443
MspCI CTTAAG 1 cut(s) 220
MspI CCGG 3 cut(s) 1097, 1472, 1510
MspR9I CCNGG 3 cut(s) 631, 735, 1472
MvaI CCWGG 2 cut(s) 631, 735
MwoI GCNNNNNNNGC 1 cut(s) 1427
NciI CCSGG 1 cut(s) 1472
NcoI CCATGG 2 cut(s) 166, 493
NdeII GATC 4 cut(s) 78, 1062, 1131, 1234
NlaIV GGNNCC 4 cut(s) 313, 732, 1284, 1380
NmuCI GTSAC 1 cut(s) 800
NspI RCATGY 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 785
PagI TCATGA 2 cut(s) 904, 1122
PceI AGGCCT 1 cut(s) 18
PciI ACATGT 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 7 cut(s) 106, 138, 517, 773, 1087, 1314, 1441
PflMI CCANNNNNTGG 1 cut(s) 1520
PfoI TCCNGGA 1 cut(s) 629
PkrI GCNGC 2 cut(s) 647, 650
PleI GAGTC 3 cut(s) 94, 797, 1150
PpsI GAGTC 3 cut(s) 94, 797, 1150
Ppu21I YACGTR 1 cut(s) 800
PpuMI RGGWCCY 1 cut(s) 1379
PscI ACATGT 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 1379
Psp6I CCWGG 2 cut(s) 629, 733
PspGI CCWGG 2 cut(s) 629, 733
PspN4I GGNNCC 4 cut(s) 313, 732, 1284, 1380
PspPI GGNCC 3 cut(s) 146, 1283, 1379
PspPPI RGGWCCY 1 cut(s) 1379
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 78, 1062
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 2 cut(s) 906, 1127
SacI GAGCTC 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 5 cut(s) 221, 506, 822, 893, 1116
SatI GCNGC 2 cut(s) 646, 649
Sau3AI GATC 4 cut(s) 78, 1062, 1131, 1234
Sau96I GGNCC 3 cut(s) 146, 1283, 1379
SchI GAGTC 3 cut(s) 94, 797, 1151
ScrFI CCNGG 3 cut(s) 631, 735, 1472
SduI GDGCHC 3 cut(s) 316, 322, 1187
SfaNI GCATC 2 cut(s) 898, 1303
Sfr274I CTCGAG 1 cut(s) 785
SinI GGWCC 2 cut(s) 1283, 1379
SlaI CTCGAG 1 cut(s) 785
SmiMI CAYNNNNRTG 2 cut(s) 906, 1127
SmlI CTYRAG 2 cut(s) 220, 785
SmoI CTYRAG 2 cut(s) 220, 785
SpeI ACTAGT 1 cut(s) 845
Sse9I AATT 8 cut(s) 292, 330, 454, 464, 599, 712, 1070, 1274
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 2 cut(s) 395, 974
SspMI CTAG 5 cut(s) 20, 846, 1022, 1205, 1253
SstI GAGCTC 1 cut(s) 322
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 3 cut(s) 629, 733, 1470
StyI CCWWGG 2 cut(s) 166, 493
TaaI ACNGT 1 cut(s) 1012
TaiI ACGT 2 cut(s) 122, 802
TaqI TCGA 5 cut(s) 334, 771, 786, 1384, 1436
TasI AATT 8 cut(s) 292, 330, 454, 464, 599, 712, 1070, 1274
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 7 cut(s) 106, 138, 517, 773, 1087, 1314, 1441
Tru1I TTAA 5 cut(s) 221, 506, 822, 893, 1116
Tru9I TTAA 5 cut(s) 221, 506, 822, 893, 1116
TscAI CASTG 3 cut(s) 766, 1192, 1420
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 2 cut(s) 645, 648
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 5 cut(s) 585, 701, 780, 1019, 1281
TspGWI ACGGA 2 cut(s) 850, 1195
TspRI CASTG 3 cut(s) 766, 1192, 1420
Van91I CCANNNNNTGG 1 cut(s) 1520
Vha464I CTTAAG 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 1283, 1379
XapI RAATTY 2 cut(s) 599, 712
XceI RCATGY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XhoI CTCGAG 1 cut(s) 785
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 5 cut(s) 20, 846, 1022, 1205, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.