Rorug05G0028700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0025551
Physical Location & Seq
Forward (+)
1835171 .. 1836742
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0028700.1

Sequence Viewer

Length: 1179 bp
ATGTCTCTCATCTCCCGCCTCCGCCAATCCTTCCTCCTCCTCCACACGCGCCGCCTCTCCACCACCACCGAACCCTCCTCCAGAGACAAAATCCGCTCCCTCATCGCCCTCCTCAAAACCGAAAAAGACCCCCACAAAATCGTCTCCCTCTGCCAATCCGCCTCCCTCACCCCCGACTCCAACCTCCACCGCATCGCCCTCACACGCGCCGTCACCTCCCTCCGCGACTCCCCCCACCCAAACCTCATCCCCCAATTCCTCGACCACCTCCTCCTCTCCCGCCCCGACCTCCAAACGCACCGTATCGCCTCCCACGTCATCCTCCTCTACGGCCGGGCCCGCATGCCCGACCACGCCGTCCGCACCTTCGAGCTTTGCCATGAACTCGGTATCCCCCAGGACGTGAAGCTCCTCAATGCCCTGTTATTATCTTGCGTTTTCGCCGAGGATTACAAAGAGGTCACTCGGATTTACCGCGATTTTCCGAAGGTTTATGGGATTCAGCCAAATCTGGACACTTACAATTGCGTACTCAAATCCCTTTCGGAGTCTGGCTCCACCGGCTCAGCCTACTCTGTTTTGGCGGAGATGGAGAGGAGGAGGATCAAGCCGGATGGGAACACGTTCGGGCACTTGCTTTCGGGGTTTTACAGCGAGGAGAGGTTTGAGGATGTGGGAAATGTGATCAATTTGATGGAGAAGTATGGGTTCCAACCGGGGCTTGATACCTACAACGTTAGGGTTCGGAGTCTCTGTAAGTTGAAGAAGTCGATGGAGGCAGAGGCATTGTTGGATGGGATGTTGGGGAGGGGTATCAAGCCGAATGCGGTCACGTTTTGCCATTTGATTCTCGGGTTTTGCAAGGAGGGGAATTCGGAGAAAGGGAAGAAGATGTTTGAGAAGATGGTGGAGAGGGGGTTTAAGCCGGACTGCAACTGCTATTATACTCTAGTGTACTACTCGTGCACAGGAGGGGATTTCGAGAGTGCGTTGAGGTTTGCGAAGGAGAGCATTGAGAAGAATTGGGTGCCGAATTTTGCTACGATGAGGTTGCTTGTGGATGGACTTGTGAGCATTGGGAAGGTGGCTGAGGCTCGCCAGCTTATCGGCCAGATGAAGGAGAAGTTCACTGTGAATCAACATAGGTGGAGTGAAGTTGAAGAAGGCTTGCCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

392

Amino Acids

44.53

Weight (kDa)

8.88

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 169 - 216 1.4e-08 PPR repeat family
PPR_3 PF13812 192 - 246 1.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 243 - 288 1.5e-08 PPR repeat family
PPR_3 PF13812 263 - 315 4.7e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 270 - 303 9.1e-09 PPR repeat
PPR_2 PF13041 277 - 318 3.6e-08 PPR repeat family
PPR PF01535 277 - 307 1.3e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025551)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003064.1_g000013
rosa_rugosa Rorug05G0028700
rosa_samantha Rh5AG122000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 1027
AccBSI CCGCTC 1 cut(s) 96
AccII CGCG 4 cut(s) 49, 207, 225, 477
AclI AACGTT 1 cut(s) 735
AclWI GGATC 1 cut(s) 611
AcoI YGGCCR 2 cut(s) 331, 1108
AcsI RAATTY 2 cut(s) 871, 1033
AfaI GTAC 2 cut(s) 531, 956
AfiI CCNNNNNNNGG 1 cut(s) 1117
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 2 cut(s) 763, 1160
AjiI CACGTC 2 cut(s) 316, 403
AjnI CCWGG 1 cut(s) 396
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
AluBI AGCT 3 cut(s) 373, 409, 1102
AluI AGCT 3 cut(s) 373, 409, 1102
Alw21I GWGCWC 1 cut(s) 968
Alw26I GTCTC 4 cut(s) 9, 78, 148, 755
Alw44I GTGCAC 1 cut(s) 964
AlwI GGATC 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 3 cut(s) 331, 336, 1108
ApaI GGGCCC 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 964
ApoI RAATTY 2 cut(s) 871, 1033
Asp700I GAANNNNTTC 1 cut(s) 623
AspLEI GCGC 2 cut(s) 51, 209
AspS9I GGNCC 2 cut(s) 336, 337
AsuC2I CCSGG 2 cut(s) 335, 717
AsuHPI GGTGA 2 cut(s) 160, 205
AvaI CYCGRG 1 cut(s) 851
BaeGI GKGCMC 3 cut(s) 340, 633, 968
BanI GGYRCC 1 cut(s) 1027
BanII GRGCYC 1 cut(s) 340
BauI CACGAG 1 cut(s) 961
Bbv12I GWGCWC 1 cut(s) 968
BbvCI CCTCAGC 1 cut(s) 1089
BccI CCATC 7 cut(s) 583, 608, 688, 766, 788, 898, 1055
BceAI ACGGC 3 cut(s) 194, 341, 346
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 1 cut(s) 398
BciVI GTATCC 1 cut(s) 401
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 2 cut(s) 335, 717
BcoDI GTCTC 4 cut(s) 9, 78, 148, 755
BfaI CTAG 1 cut(s) 950
BfuI GTATCC 1 cut(s) 401
BisI GCNGC 1 cut(s) 52
BlpI GCTNAGC 1 cut(s) 565
BlsI GCNGC 1 cut(s) 53
Bme1390I CCNGG 3 cut(s) 335, 398, 717
BmeT110I CYCGRG 1 cut(s) 851
BmgBI CACGTC 2 cut(s) 316, 403
BmgT120I GGNCC 2 cut(s) 336, 337
BmiI GGNNCC 4 cut(s) 338, 556, 710, 1029
BmrFI CCNGG 3 cut(s) 335, 398, 717
BmsI GCATC 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 1089
Bpu1102I GCTNAGC 1 cut(s) 565
BpuMI CCSGG 2 cut(s) 335, 717
BsaJI CCNNGG 3 cut(s) 396, 444, 716
BsaXI ACNNNNNCTCC 4 cut(s) 739, 769, 902, 932
Bsc4I CCNNNNNNNGG 1 cut(s) 1117
Bse118I RCCGGY 1 cut(s) 560
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 396, 444, 716
BseGI GGATG 7 cut(s) 246, 318, 619, 676, 799, 804, 1066
BseLI CCNNNNNNNGG 1 cut(s) 1117
BseMII CTCAG 2 cut(s) 579, 1080
BseSI GKGCMC 3 cut(s) 340, 633, 968
BseX3I CGGCCG 1 cut(s) 331
Bsh1236I CGCG 4 cut(s) 49, 207, 225, 477
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 3 cut(s) 333, 338, 1110
BshNI GGYRCC 1 cut(s) 1027
BsiEI CGRYCG 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 968
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 5 cut(s) 334, 561, 611, 716, 926
BslI CCNNNNNNNGG 1 cut(s) 1117
BsmAI GTCTC 4 cut(s) 9, 78, 148, 755
BsmBI CGTCTC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 3 cut(s) 333, 338, 1110
BsoBI CYCGRG 1 cut(s) 851
Bsp120I GGGCCC 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 340, 633, 968
Bsp143I GATC 2 cut(s) 603, 684
Bsp1720I GCTNAGC 1 cut(s) 565
BspANI GGCC 3 cut(s) 333, 338, 1110
BspCNI CTCAG 2 cut(s) 578, 1081
BspFNI CGCG 4 cut(s) 49, 207, 225, 477
BspLI GGNNCC 4 cut(s) 338, 556, 710, 1029
BspPI GGATC 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 1027
BsrBI CCGCTC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 396, 444, 716
BssMI GATC 2 cut(s) 603, 684
BssSI CACGAG 1 cut(s) 961
Bst2BI CACGAG 1 cut(s) 961
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 3 cut(s) 302, 1132, 1176
BstC8I GCNNGC 5 cut(s) 340, 344, 1096, 1100, 1169
BstDEI CTNAG 2 cut(s) 565, 1089
BstF5I GGATG 7 cut(s) 246, 318, 619, 676, 799, 804, 1066
BstFNI CGCG 4 cut(s) 49, 207, 225, 477
BstHHI GCGC 2 cut(s) 51, 209
BstKTI GATC 2 cut(s) 606, 687
BstMAI GTCTC 4 cut(s) 9, 78, 148, 755
BstMBI GATC 2 cut(s) 603, 684
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 339, 561
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 3 cut(s) 333, 396, 715
BstSLI GKGCMC 3 cut(s) 340, 633, 968
BstUI CGCG 4 cut(s) 49, 207, 225, 477
BstZI CGGCCG 1 cut(s) 331
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 3 cut(s) 333, 338, 1110
BtgZI GCGATG 2 cut(s) 88, 178
BtrI CACGTC 2 cut(s) 316, 403
BtsCI GGATG 7 cut(s) 246, 318, 619, 676, 799, 804, 1066
BtsIMutI CAGTG 1 cut(s) 1128
Cac8I GCNNGC 5 cut(s) 340, 344, 1096, 1100, 1169
CfoI GCGC 2 cut(s) 51, 209
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 336, 337
Csp6I GTAC 2 cut(s) 530, 955
CspCI CAANNNNNGTGG 2 cut(s) 1127, 1162
CviAII CATG 2 cut(s) 343, 380
CviQI GTAC 2 cut(s) 530, 955
DdeI CTNAG 2 cut(s) 565, 1089
DpnI GATC 2 cut(s) 605, 686
DpnII GATC 2 cut(s) 603, 684
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 2 cut(s) 331, 1108
EagI CGGCCG 1 cut(s) 331
EciI GGCGGA 3 cut(s) 11, 148, 599
EclXI CGGCCG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 340
Eco52I CGGCCG 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 2 cut(s) 346, 383
FaiI YATR 6 cut(s) 344, 381, 495, 705, 945, 1143
FatI CATG 2 cut(s) 342, 379
FauI CCCGC 3 cut(s) 23, 287, 347
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 7 cut(s) 233, 305, 626, 683, 806, 811, 1073
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 1 cut(s) 950
GlaI GCGC 2 cut(s) 50, 208
GluI GCNGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 3 cut(s) 333, 338, 1110
HapII CCGG 5 cut(s) 334, 561, 611, 716, 926
HhaI GCGC 2 cut(s) 51, 209
Hin1II CATG 2 cut(s) 346, 383
Hin6I GCGC 2 cut(s) 49, 207
HinP1I GCGC 2 cut(s) 49, 207
HinfI GANTC 7 cut(s) 176, 227, 499, 548, 748, 847, 1135
HpaII CCGG 5 cut(s) 334, 561, 611, 716, 926
HphI GGTGA 2 cut(s) 160, 205
Hpy166II GTNNAC 3 cut(s) 955, 966, 1128
Hpy188I TCNGA 5 cut(s) 468, 486, 547, 747, 877
Hpy188III TCNNGA 3 cut(s) 81, 512, 982
Hpy8I GTNNAC 3 cut(s) 955, 966, 1128
HpyAV CCTTC 7 cut(s) 40, 376, 481, 997, 1075, 1111, 1157
HpyCH4III ACNGT 3 cut(s) 302, 1132, 1176
HpyCH4IV ACGT 5 cut(s) 315, 402, 623, 735, 833
HpyCH4V TGCA 3 cut(s) 861, 933, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 561
HpyF3I CTNAG 2 cut(s) 565, 1089
HpySE526I ACGT 5 cut(s) 315, 402, 623, 735, 833
Hsp92II CATG 2 cut(s) 346, 383
HspAI GCGC 2 cut(s) 49, 207
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 2 cut(s) 603, 684
LmnI GCTCC 3 cut(s) 101, 414, 560
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 950
MaeII ACGT 5 cut(s) 315, 402, 623, 735, 833
MaeIII GTNAC 3 cut(s) 211, 460, 829
MalI GATC 2 cut(s) 605, 686
MbiI CCGCTC 1 cut(s) 96
MboI GATC 2 cut(s) 603, 684
MboII GAAGA 6 cut(s) 775, 898, 901, 913, 1030, 1172
MfeI CAATTG 1 cut(s) 523
MhlI GDGCHC 3 cut(s) 340, 633, 968
MluCI AATT 6 cut(s) 254, 523, 688, 871, 1021, 1033
MlyI GAGTC 4 cut(s) 170, 221, 557, 757
MmeI TCCRAC 3 cut(s) 204, 736, 771
MroXI GAANNNNTTC 1 cut(s) 623
MseI TTAA 1 cut(s) 921
MspI CCGG 5 cut(s) 334, 561, 611, 716, 926
MspR9I CCNGG 3 cut(s) 335, 398, 717
MunI CAATTG 1 cut(s) 523
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 4 cut(s) 49, 207, 225, 477
MwoI GCNNNNNNNGC 2 cut(s) 339, 561
NciI CCSGG 2 cut(s) 335, 717
NdeII GATC 2 cut(s) 603, 684
NlaIII CATG 2 cut(s) 346, 383
NlaIV GGNNCC 4 cut(s) 338, 556, 710, 1029
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 3 cut(s) 211, 460, 829
NspI RCATGY 1 cut(s) 346
PaeI GCATGC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 829
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 3 cut(s) 499, 847, 1135
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 4 cut(s) 170, 221, 556, 756
PpsI GAGTC 4 cut(s) 170, 221, 556, 756
Psp1406I AACGTT 1 cut(s) 735
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 4 cut(s) 338, 556, 710, 1029
PspOMI GGGCCC 1 cut(s) 336
PspPI GGNCC 2 cut(s) 336, 337
RsaI GTAC 2 cut(s) 531, 956
RsaNI GTAC 2 cut(s) 530, 955
SaqAI TTAA 1 cut(s) 921
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 2 cut(s) 603, 684
Sau96I GGNCC 2 cut(s) 336, 337
SchI GAGTC 4 cut(s) 170, 221, 557, 757
ScrFI CCNGG 3 cut(s) 335, 398, 717
SduI GDGCHC 3 cut(s) 340, 633, 968
SfaNI GCATC 1 cut(s) 201
SphI GCATGC 1 cut(s) 346
Sse9I AATT 6 cut(s) 254, 523, 688, 871, 1021, 1033
SspMI CTAG 1 cut(s) 950
StyD4I CCNGG 3 cut(s) 333, 396, 715
TaaI ACNGT 3 cut(s) 302, 1132, 1176
TaiI ACGT 5 cut(s) 318, 405, 626, 738, 836
TaqI TCGA 4 cut(s) 261, 369, 770, 981
TasI AATT 6 cut(s) 254, 523, 688, 871, 1021, 1033
TatI WGTACW 1 cut(s) 954
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 3 cut(s) 499, 847, 1135
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TscAI CASTG 1 cut(s) 1135
TseFI GTSAC 3 cut(s) 211, 460, 829
Tsp45I GTSAC 3 cut(s) 211, 460, 829
TspDTI ATGAA 2 cut(s) 396, 1130
TspRI CASTG 1 cut(s) 1135
VneI GTGCAC 1 cut(s) 964
XapI RAATTY 2 cut(s) 871, 1033
XceI RCATGY 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 623
XspI CTAG 1 cut(s) 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.