Rh5AG122000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0025551
Physical Location & Seq
Forward (+)
11392257 .. 11396516
4260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG122000.1

Sequence Viewer

Length: 234 bp
ATGGATTTGCCCAGAATATCACCAAACCTGGAACATCTTGTGGTTGACAACGACATTGCATGTGCACATTCGGTTGCTGACAATAAGCATGAATGGCATCCACCGGAGTCTGCGGCTGTTTGTTTGGTATCGCACATCAAGACTATTTGCTTCATGAGGAGATTCCAGGGAACTCCAAATGAGATTAAAGTGGTCAAGTACTTGCAGAAGCATGGCGAGGTTTTTCACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

77

Amino Acids

8.83

Weight (kDa)

7.05

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 35 - 74 1.3e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025551)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003064.1_g000013
rosa_rugosa Rorug05G0028700
rosa_samantha Rh5AG122000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AfaI GTAC 1 cut(s) 200
AjnI CCWGG 2 cut(s) 27, 165
Alw21I GWGCWC 1 cut(s) 67
Alw44I GTGCAC 1 cut(s) 63
ApaLI GTGCAC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 29, 167
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 2 cut(s) 29, 167
BmrFI CCNGG 2 cut(s) 29, 167
BmsI GCATC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 2 cut(s) 29, 167
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 67
BspACI CCGC 1 cut(s) 113
BspHI TCATGA 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 29, 167
BstF5I GGATG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 2 cut(s) 29, 167
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 2 cut(s) 27, 165
BstSLI GKGCMC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 97
CciI TCATGA 1 cut(s) 153
Csp6I GTAC 1 cut(s) 199
CviAII CATG 4 cut(s) 60, 89, 154, 212
CviJI RGCY 1 cut(s) 116
CviKI_1 RGCY 1 cut(s) 116
CviQI GTAC 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 27, 165
FaeI CATG 4 cut(s) 63, 92, 157, 215
FaiI YATR 4 cut(s) 61, 90, 155, 213
FatI CATG 4 cut(s) 59, 88, 153, 211
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HapII CCGG 1 cut(s) 104
Hin1II CATG 4 cut(s) 63, 92, 157, 215
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 2 cut(s) 107, 162
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 46, 65
Hpy188III TCNNGA 2 cut(s) 139, 154
Hpy8I GTNNAC 2 cut(s) 46, 65
HpyCH4V TGCA 3 cut(s) 59, 65, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
Hsp92II CATG 4 cut(s) 63, 92, 157, 215
LpnPI CCDG 6 cut(s) 14, 25, 41, 117, 152, 179
LweI GCATC 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 67
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 150, 211
MseI TTAA 1 cut(s) 186
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 29, 167
MvaI CCWGG 2 cut(s) 29, 167
MwoI GCNNNNNNNGC 1 cut(s) 94
NlaIII CATG 4 cut(s) 63, 92, 157, 215
NspI RCATGY 1 cut(s) 63
PagI TCATGA 1 cut(s) 153
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp6I CCWGG 2 cut(s) 27, 165
PspGI CCWGG 2 cut(s) 27, 165
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 114
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 29, 167
SduI GDGCHC 1 cut(s) 67
SetI ASST 2 cut(s) 30, 222
SfaNI GCATC 1 cut(s) 106
SsiI CCGC 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 27, 165
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 105, 142
VneI GTGCAC 1 cut(s) 63
XceI RCATGY 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.