Rorug05G0240200

Tyrosine kinase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0022795
Physical Location & Seq
Forward (+)
25498648 .. 25499667
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0240200.1

Sequence Viewer

Length: 1020 bp
ATGTCTGAAACTTGTTTCTTTTCACATAAAGAGGCCTACAGTTTCTTGTCTCCTCATGATGCGACCGTCCATTGGGGAAAACTAATTTGGCACCAGTGTATTCAGCCAAAAAAGAGCCTAGTAGCATGGCAAGTTTTTAATGGAAAGGCTAAAATTGATAGTTATCTACAAAAAATTTGGGCTTGGCTGTTCTCTCTTTTCCGTCTCCCTCTTTGGCAGCAACCAAACCTGGACTTCTTGTTTTCTGCTGATTTGCTTCAGCGCCTATCCCCAGCTTCGAAGATATTGCGGAGGATGGCTGTGTGTAGCCTGCTTTGGTTTACTTGGACTGAACAGAATAGACTCAGAAATGAGGACATTATTTTTAATTTGGGGCGCTTTACACATCGTTTCATTTTGGTTCTAAAAGAAGCTGCTCACATAGTTTTCAAACCCTATACCAATTCTGCTTCGGCTCTTCCAATTTTTTTGCTACTGGAAATATCACCGCTGAGGTGCAGTGCACAATCATTCAAACCTGTGAAATGGTGTCCTCCACCTGATCATTGGCTAAAAGTGAACACTGATGGGTCCTTTAGAGATGCTACAAGGGCTGGGTATGGAGGTATTTTTAGGGATGTAGATGGAAAATTTGTTGGTGCTTTCTCTACCAGAGTTGATGTTCCTAGTACCATAGATGCTGAGGTTCTCGCCGTTATTGAAGCCATTCAGGTGGCTTCGGTTAGGCGTTGGACTCACATATGGTTGGAAACGGACTCAATGCTTGTCCTGCATTACTTTCGTGCCCCAAGCCTTATTCCTTGCAGAGTTAGAACTCGGTGGCATAATTGTCTGCTTCAAGCTAGTCAAATGACTTTTCATGTCTCACATATCTATAGAGAAGGCAACAGTGTGGCAGATAAGCTGGCTAACTACGGCGCATTGAATGAAGGATCTGTCTGGTGGATTTCCCCTCCTTCGTTCATCAATGCTCAGTACAGTCATGATTATAATTCACGAACTAGTTATCGGATCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MS_channel Pkinase_Tyr

Protein Analysis

339

Amino Acids

39.27

Weight (kDa)

9.39

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 7 - 58 1.3e-06 zinc-binding in reverse transcriptase
RVT_3 PF13456 187 - 305 4.5e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022795)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0277171
rosa_roxburghii Rroxscaffold_4G00324690
rosa_rugosa Rorug05G0240200 Rorug05G0289200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 990
AccB1I GGYRCC 1 cut(s) 90
AciI CCGC 2 cut(s) 289, 488
AclWI GGATC 2 cut(s) 940, 1019
AcsI RAATTY 2 cut(s) 174, 629
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 2 cut(s) 670, 977
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 5 cut(s) 430, 514, 701, 839, 925
AhlI ACTAGT 1 cut(s) 1001
AjnI CCWGG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 4 cut(s) 275, 413, 842, 904
AluI AGCT 4 cut(s) 275, 413, 842, 904
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 3 cut(s) 54, 209, 868
Alw44I GTGCAC 1 cut(s) 501
AlwI GGATC 2 cut(s) 940, 1019
AoxI GGCC 1 cut(s) 33
ApaLI GTGCAC 1 cut(s) 501
ApeKI GCWGC 2 cut(s) 217, 413
ApoI RAATTY 2 cut(s) 174, 629
Asp700I GAANNNNTTC 1 cut(s) 705
AspLEI GCGC 3 cut(s) 264, 378, 920
AspS9I GGNCC 1 cut(s) 570
AsuHPI GGTGA 1 cut(s) 477
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 570
BaeGI GKGCMC 2 cut(s) 505, 787
BanI GGYRCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 505
BbvCI CCTCAGC 2 cut(s) 491, 681
BbvI GCAGC 2 cut(s) 229, 400
BccI CCATC 3 cut(s) 289, 560, 617
BceAI ACGGC 2 cut(s) 677, 931
BcgI CGANNNNNNTGC 4 cut(s) 268, 302, 761, 795
BciT130I CCWGG 1 cut(s) 230
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 3 cut(s) 54, 209, 868
BcuI ACTAGT 1 cut(s) 1001
BfaI CTAG 4 cut(s) 119, 666, 843, 1002
BfmI CTRYAG 2 cut(s) 37, 874
BfoI RGCGCY 2 cut(s) 265, 379
BisI GCNGC 2 cut(s) 218, 414
BlsI GCNGC 2 cut(s) 219, 415
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 2 cut(s) 92, 571
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 3 cut(s) 49, 571, 667
Bpu10I CCTNAGC 2 cut(s) 491, 681
Bpu14I TTCGAA 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 94, 480
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 230
BseGI GGATG 2 cut(s) 300, 622
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 4 cut(s) 358, 482, 672, 986
BseNI ACTGG 2 cut(s) 94, 480
BseRI GAGGAG 1 cut(s) 42
BseSI GKGCMC 2 cut(s) 505, 787
BseXI GCAGC 2 cut(s) 229, 400
BseYI CCCAGC 2 cut(s) 271, 593
BsgI GTGCAG 1 cut(s) 517
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 3 cut(s) 54, 209, 868
BsmBI CGTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 505, 787
Bsp143I GATC 3 cut(s) 541, 932, 1011
BspACI CCGC 2 cut(s) 289, 488
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 4 cut(s) 357, 483, 673, 985
BspHI TCATGA 2 cut(s) 55, 982
BspLI GGNNCC 2 cut(s) 92, 571
BspPI GGATC 2 cut(s) 940, 1019
BspQI GCTCTTC 1 cut(s) 462
BspT104I TTCGAA 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 94, 480
BssMI GATC 3 cut(s) 541, 932, 1011
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 4 cut(s) 41, 67, 890, 980
Bst6I CTCTTC 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 311, 906
BstDEI CTNAG 5 cut(s) 344, 491, 681, 972, 1017
BstF5I GGATG 2 cut(s) 300, 622
BstH2I RGCGCY 2 cut(s) 265, 379
BstHHI GCGC 3 cut(s) 264, 378, 920
BstKTI GATC 3 cut(s) 544, 935, 1014
BstMAI GTCTC 3 cut(s) 54, 209, 868
BstMBI GATC 3 cut(s) 541, 932, 1011
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 590, 769
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 2 cut(s) 37, 874
BstSLI GKGCMC 2 cut(s) 505, 787
BstV1I GCAGC 2 cut(s) 229, 400
BstX2I RGATCY 2 cut(s) 932, 1011
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 2 cut(s) 932, 1011
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 2 cut(s) 300, 622
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 4 cut(s) 101, 505, 561, 895
Cac8I GCNNGC 2 cut(s) 311, 906
CciI TCATGA 2 cut(s) 55, 982
CfoI GCGC 3 cut(s) 264, 378, 920
Cfr13I GGNCC 1 cut(s) 570
Csp6I GTAC 2 cut(s) 669, 976
CviAII CATG 4 cut(s) 56, 126, 860, 983
CviQI GTAC 2 cut(s) 669, 976
DdeI CTNAG 5 cut(s) 344, 491, 681, 972, 1017
DpnI GATC 3 cut(s) 543, 934, 1013
DpnII GATC 3 cut(s) 541, 932, 1011
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco147I AGGCCT 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 570
EcoRII CCWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 4 cut(s) 59, 129, 863, 986
FatI CATG 4 cut(s) 55, 125, 859, 982
FauNDI CATATG 1 cut(s) 740
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 2 cut(s) 218, 414
FokI GGATG 2 cut(s) 307, 629
Fsp4HI GCNGC 2 cut(s) 218, 414
FspBI CTAG 4 cut(s) 119, 666, 843, 1002
GlaI GCGC 3 cut(s) 263, 377, 919
GluI GCNGC 2 cut(s) 218, 414
GsaI CCCAGC 2 cut(s) 275, 597
HaeII RGCGCY 2 cut(s) 265, 379
HaeIII GGCC 1 cut(s) 35
HhaI GCGC 3 cut(s) 264, 378, 920
Hin1II CATG 4 cut(s) 59, 129, 863, 986
Hin6I GCGC 3 cut(s) 262, 376, 918
HinP1I GCGC 3 cut(s) 262, 376, 918
HinfI GANTC 3 cut(s) 342, 733, 755
HphI GGTGA 1 cut(s) 477
Hpy166II GTNNAC 3 cut(s) 321, 503, 559
Hpy188I TCNGA 3 cut(s) 7, 347, 1011
Hpy188III TCNNGA 3 cut(s) 56, 983, 996
Hpy8I GTNNAC 3 cut(s) 321, 503, 559
HpyAV CCTTC 3 cut(s) 875, 923, 966
HpyCH4III ACNGT 4 cut(s) 41, 67, 890, 980
HpyCH4V TGCA 4 cut(s) 498, 503, 772, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 769
HpyF3I CTNAG 5 cut(s) 344, 491, 681, 972, 1017
Hsp92II CATG 4 cut(s) 59, 129, 863, 986
HspAI GCGC 3 cut(s) 262, 376, 918
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 3 cut(s) 541, 932, 1011
LguI GCTCTTC 1 cut(s) 462
Lsp1109I GCAGC 2 cut(s) 229, 400
LweI GCATC 3 cut(s) 49, 571, 667
MaeI CTAG 4 cut(s) 119, 666, 843, 1002
MalI GATC 3 cut(s) 543, 934, 1013
MboI GATC 3 cut(s) 541, 932, 1011
MboII GAAGA 2 cut(s) 292, 449
MflI RGATCY 2 cut(s) 932, 1011
MhlI GDGCHC 2 cut(s) 505, 787
MluCI AATT 9 cut(s) 84, 153, 174, 367, 442, 462, 629, 826, 991
MlyI GAGTC 3 cut(s) 336, 727, 749
MmeI TCCRAC 2 cut(s) 710, 726
MroXI GAANNNNTTC 1 cut(s) 705
MseI TTAA 2 cut(s) 138, 366
MslI CAYNNNNRTG 1 cut(s) 710
MspA1I CMGCKG 1 cut(s) 490
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 590, 769
NdeI CATATG 1 cut(s) 740
NdeII GATC 3 cut(s) 541, 932, 1011
NlaIII CATG 4 cut(s) 59, 129, 863, 986
NlaIV GGNNCC 2 cut(s) 92, 571
NspV TTCGAA 1 cut(s) 278
PagI TCATGA 2 cut(s) 55, 982
PceI AGGCCT 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 705
PkrI GCNGC 2 cut(s) 219, 415
PleI GAGTC 3 cut(s) 336, 727, 749
PpsI GAGTC 3 cut(s) 336, 727, 749
PpuMI RGGWCCY 1 cut(s) 570
PsiI TTATAA 1 cut(s) 990
Psp5II RGGWCCY 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 2 cut(s) 271, 593
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 92, 571
PspPI GGNCC 1 cut(s) 570
PspPPI RGGWCCY 1 cut(s) 570
PsuI RGATCY 2 cut(s) 932, 1011
RsaI GTAC 2 cut(s) 670, 977
RsaNI GTAC 2 cut(s) 669, 976
RseI CAYNNNNRTG 1 cut(s) 710
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 2 cut(s) 138, 366
SatI GCNGC 2 cut(s) 218, 414
Sau3AI GATC 3 cut(s) 541, 932, 1011
Sau96I GGNCC 1 cut(s) 570
SchI GAGTC 3 cut(s) 336, 727, 749
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 505, 787
SfaNI GCATC 3 cut(s) 49, 571, 667
SfcI CTRYAG 2 cut(s) 37, 874
SfuI TTCGAA 1 cut(s) 278
SinI GGWCC 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 710
SpeI ACTAGT 1 cut(s) 1001
Sse9I AATT 9 cut(s) 84, 153, 174, 367, 442, 462, 629, 826, 991
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 2 cut(s) 289, 488
SspMI CTAG 4 cut(s) 119, 666, 843, 1002
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 4 cut(s) 41, 67, 890, 980
TaqI TCGA 1 cut(s) 278
TasI AATT 9 cut(s) 84, 153, 174, 367, 442, 462, 629, 826, 991
TatI WGTACW 1 cut(s) 975
Tru1I TTAA 2 cut(s) 138, 366
Tru9I TTAA 2 cut(s) 138, 366
TscAI CASTG 4 cut(s) 101, 505, 568, 895
TseI GCWGC 2 cut(s) 217, 413
TspDTI ATGAA 4 cut(s) 382, 848, 942, 952
TspGWI ACGGA 2 cut(s) 191, 767
TspRI CASTG 4 cut(s) 101, 505, 568, 895
VneI GTGCAC 1 cut(s) 501
VpaK11BI GGWCC 1 cut(s) 570
XapI RAATTY 2 cut(s) 174, 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 543
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 4 cut(s) 119, 666, 843, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.