Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014991

Physical Location & Seq

Genomic Coordinates Forward (+)

54412401 .. 54412715

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0396300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGGAGGACATGGCTTCAAGGTTGGCGGCTGCATTGGCTCTGACGGAGGACGTGGTAGTTGATTTCAGGGCAGTGGGCTCGATGCTGGTGGCGGACGACTACCATTTCTTGGTTGGTCGTCTGATTCAAAGGAAGGAGAGTGATGACAAGGGTCTCCCTGGTACCCTTTCTGCTATTTGGGGTCTGGGAGACCGCCTAGCTATATCGGCGGCTGGAGGAGGTCATTTTCTGTTCCAAATTCAATGCAAGGAAGAGTGCAATAAGATTCTGATAGGGGTCCTTGGTTTTTCAATGGTCATATGGTCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009405 GO:0009987 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0034480 GO:0035821 GO:0042578 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0046434 GO:0051701 GO:0051704 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

104

Amino Acids

11.19

Weight (kDa)

4.94

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	36 - 91	3.9e-06	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07230
fragaria_vesca	FvH4_3g38460 FvH4_3g38460
malus_domestica	MD03G1071800.v1.1 MD11G1075900.v1.1
prunus_persica	Prupe.6G058400_v2.0.a1
pyrus_communis	pycom03g05800
rosa_chinensis	RchiOBHm_Chr5g0069151
rosa_laevigata	RLG00000036040
rosa_multiflora	Rmu_sc0000936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00011640
rosa_rugosa	Rorug05G0396300
rosa_samantha	Rh5AG453200 Rh5CG494800
rosa_wichuraiana	Rw0G006040 Rw5G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	112
AciI	CCGC	5 cut(s)	5, 29, 95, 196, 212
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	21, 131, 245, 294
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	2 cut(s)	161, 186
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	240
Asp718I	GGTACC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	280, 306
AvaII	GGWCC	2 cut(s)	280, 306
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	161, 186
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	3 cut(s)	30, 33, 213
BlsI	GCNGC	3 cut(s)	31, 34, 214
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	280, 306
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	280, 306
BmiI	GGNNCC	2 cut(s)	166, 281
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	237
BsaI	GGTCTC	2 cut(s)	161, 186
BsaJI	CCNNGG	2 cut(s)	160, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	160, 283
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	161, 186
Bso31I	GGTCTC	2 cut(s)	161, 186
Bsp1286I	GDGCHC	1 cut(s)	83
BspACI	CCGC	5 cut(s)	5, 29, 95, 196, 212
BspLI	GGNNCC	2 cut(s)	166, 281
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	2 cut(s)	161, 186
BssECI	CCNNGG	2 cut(s)	160, 283
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	249
BstMAI	GTCTC	2 cut(s)	161, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 209
BstNI	CCWGG	1 cut(s)	162
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	280, 306
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	17, 32, 41, 81, 203, 215
CviKI_1	RGCY	6 cut(s)	17, 32, 41, 81, 203, 215
CviQI	GTAC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	2 cut(s)	20, 110
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	2 cut(s)	161, 186
Eco47I	GGWCC	2 cut(s)	280, 306
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 206, 302, 304
FatI	CATG	1 cut(s)	12
FauNDI	CATATG	1 cut(s)	302
Fnu4HI	GCNGC	3 cut(s)	30, 33, 213
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	3 cut(s)	30, 33, 213
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	3 cut(s)	30, 33, 213
GsuI	CTGGAG	1 cut(s)	237
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	2 cut(s)	127, 268
Hpy188I	TCNGA	3 cut(s)	45, 126, 273
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	35, 249, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 209
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	16
KpnI	GGTACC	1 cut(s)	168
LpnPI	CCDG	6 cut(s)	55, 74, 147, 173, 174, 201
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	54
MboII	GAAGA	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	240
MnlI	CCTC	3 cut(s)	43, 212, 215
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	38, 209
NdeI	CATATG	1 cut(s)	302
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	2 cut(s)	166, 281
PfeI	GAWTC	2 cut(s)	127, 268
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	31, 34, 214
PpuMI	RGGWCCY	1 cut(s)	280
PshAI	GACNNNNGTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	166, 281
PspPI	GGNCC	2 cut(s)	280, 306
PspPPI	RGGWCCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SatI	GCNGC	3 cut(s)	30, 33, 213
Sau96I	GGNCC	2 cut(s)	280, 306
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	4 cut(s)	26, 57, 205, 226
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	2 cut(s)	280, 306
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	5 cut(s)	5, 29, 95, 196, 212
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	283
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	240
TauI	GCSGC	2 cut(s)	32, 215
TfiI	GAWTC	2 cut(s)	127, 268
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	280, 306
XapI	RAATTY	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.