Rorug05G0424600

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0020137
Physical Location & Seq
Reverse (-)
58997904 .. 58998176
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0424600.1

Sequence Viewer

Length: 273 bp
ATGATTAATCATGGTGATGCAGCATGTCCGCGTATGGCAGAGGAGGATGCAGCGGTCGGTGGGACTATGGTGGTAGAGGCAGCAATGGATGTAGGGTCGACAACCATGGAGGCCAGGGGGAGTACACCTCCTGTCCTAGTTTCTTCAGAGCTTCCTGCTGCTCTTGTGGAGGCCGGGGAGCCAATTAGGGTTTCTGGGGTGAAGAGGTTGAGGGATGATGTGTTGTTTGGTGTTGGAAAGCGTCCAAAGCATGGTTTGGAGTGGTGCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

90

Amino Acids

9.42

Weight (kDa)

5.02

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020137)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0073541
rosa_multiflora Rmu_ssc0000226.1_g000007
rosa_roxburghii Rroxscaffold_1G00007730
rosa_rugosa Rorug05G0424600
rosa_samantha Rh5BG502400
rosa_wichuraiana Rw5G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AccB7I CCANNNNNTGG 1 cut(s) 251
AccI GTMKAC 1 cut(s) 98
AccII CGCG 1 cut(s) 31
AciI CCGC 2 cut(s) 29, 53
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 251
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AoxI GGCC 2 cut(s) 111, 171
ApeKI GCWGC 4 cut(s) 20, 50, 80, 158
AseI ATTAAT 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 26, 211
BanI GGYRCC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 32, 62, 92, 145
BciT130I CCWGG 1 cut(s) 115
BcnI CCSGG 1 cut(s) 175
BfaI CTAG 2 cut(s) 137, 271
BisI GCNGC 4 cut(s) 21, 51, 81, 159
BlsI GCNGC 4 cut(s) 22, 52, 82, 160
Bme1390I CCNGG 2 cut(s) 115, 175
BmiI GGNNCC 2 cut(s) 180, 266
BmrFI CCNGG 2 cut(s) 115, 175
BmsI GCATC 2 cut(s) 7, 37
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 105, 114, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 105, 114, 174
BseGI GGATG 3 cut(s) 52, 94, 220
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 32, 62, 92, 145
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 113, 173
BshNI GGYRCC 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 2 cut(s) 113, 173
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 2 cut(s) 29, 53
BspANI GGCC 2 cut(s) 113, 173
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 180, 266
BspT107I GGYRCC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 3 cut(s) 105, 114, 174
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 197
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 3 cut(s) 52, 94, 220
BstFNI CGCG 1 cut(s) 31
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 113, 173
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 4 cut(s) 32, 62, 92, 145
BsuRI GGCC 2 cut(s) 113, 173
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 52, 94, 220
CseI GACGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 123
CviAII CATG 4 cut(s) 11, 24, 106, 251
CviJI RGCY 4 cut(s) 113, 151, 173, 181
CviKI_1 RGCY 4 cut(s) 113, 151, 173, 181
CviQI GTAC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 4 cut(s) 14, 27, 109, 254
FaiI YATR 6 cut(s) 12, 25, 35, 68, 107, 252
FaqI GGGAC 1 cut(s) 76
FatI CATG 4 cut(s) 10, 23, 105, 250
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 4 cut(s) 21, 51, 81, 159
FokI GGATG 3 cut(s) 59, 101, 227
Fsp4HI GCNGC 4 cut(s) 21, 51, 81, 159
FspBI CTAG 2 cut(s) 137, 271
GluI GCNGC 4 cut(s) 21, 51, 81, 159
HaeIII GGCC 2 cut(s) 113, 173
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 230
Hin1II CATG 4 cut(s) 14, 27, 109, 254
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 26, 211
Hpy166II GTNNAC 2 cut(s) 99, 125
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 2 cut(s) 99, 125
HpyCH4V TGCA 2 cut(s) 20, 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
Hsp92II CATG 4 cut(s) 14, 27, 109, 254
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 6 cut(s) 100, 127, 144, 168, 180, 187
Lsp1109I GCAGC 4 cut(s) 32, 62, 92, 145
LweI GCATC 2 cut(s) 7, 37
MaeI CTAG 2 cut(s) 137, 271
MboII GAAGA 2 cut(s) 135, 214
MluCI AATT 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 8 cut(s) 34, 37, 70, 103, 138, 163, 198, 204
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 115, 175
MvaI CCWGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 175
NcoI CCATGG 1 cut(s) 105
NlaIII CATG 4 cut(s) 14, 27, 109, 254
NlaIV GGNNCC 2 cut(s) 180, 266
NspI RCATGY 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 4 cut(s) 22, 52, 82, 160
PshBI ATTAAT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 180, 266
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 4 cut(s) 21, 51, 81, 159
ScrFI CCNGG 2 cut(s) 115, 175
SetI ASST 3 cut(s) 130, 153, 209
SfaNI GCATC 2 cut(s) 7, 37
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 183
SsiI CCGC 2 cut(s) 29, 53
SspMI CTAG 2 cut(s) 137, 271
StyD4I CCNGG 2 cut(s) 113, 173
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 122
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseI GCWGC 4 cut(s) 20, 50, 80, 158
Van91I CCANNNNNTGG 1 cut(s) 251
VspI ATTAAT 1 cut(s) 6
XceI RCATGY 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 2 cut(s) 137, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.