divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_rugosa | Rorug05G0430100 |
| rosa_samantha | Rh5DG520700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 396 |
| Acc36I | ACCTGC | 1 cut(s) | 1049 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 177 |
| AccI | GTMKAC | 1 cut(s) | 1188 |
| AciI | CCGC | 4 cut(s) | 65, 776, 828, 889 |
| AclWI | GGATC | 5 cut(s) | 191, 321, 330, 367, 1073 |
| AcsI | RAATTY | 3 cut(s) | 52, 92, 975 |
| AcuI | CTGAAG | 2 cut(s) | 205, 338 |
| AfaI | GTAC | 2 cut(s) | 227, 989 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 177, 444, 740, 1175 |
| AgeI | ACCGGT | 1 cut(s) | 136 |
| AgsI | TTSAA | 6 cut(s) | 273, 310, 520, 700, 1099, 1129 |
| AjnI | CCWGG | 1 cut(s) | 257 |
| AluBI | AGCT | 4 cut(s) | 83, 255, 707, 1139 |
| AluI | AGCT | 4 cut(s) | 83, 255, 707, 1139 |
| Alw21I | GWGCWC | 1 cut(s) | 654 |
| Alw26I | GTCTC | 1 cut(s) | 1148 |
| AlwI | GGATC | 5 cut(s) | 191, 321, 330, 367, 1073 |
| AoxI | GGCC | 1 cut(s) | 687 |
| ApeKI | GCWGC | 2 cut(s) | 75, 1006 |
| ApoI | RAATTY | 3 cut(s) | 52, 92, 975 |
| AsiGI | ACCGGT | 1 cut(s) | 136 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 218 |
| AspS9I | GGNCC | 3 cut(s) | 4, 277, 687 |
| AsuC2I | CCSGG | 1 cut(s) | 377 |
| AsuHPI | GGTGA | 4 cut(s) | 235, 611, 943, 1158 |
| AvaII | GGWCC | 2 cut(s) | 4, 277 |
| Bbv12I | GWGCWC | 1 cut(s) | 654 |
| BbvI | GCAGC | 2 cut(s) | 87, 1018 |
| BccI | CCATC | 3 cut(s) | 326, 589, 818 |
| BceAI | ACGGC | 2 cut(s) | 88, 118 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 144, 178 |
| BciT130I | CCWGG | 1 cut(s) | 259 |
| BciVI | GTATCC | 1 cut(s) | 178 |
| BcnI | CCSGG | 1 cut(s) | 377 |
| BcoDI | GTCTC | 1 cut(s) | 1148 |
| BfaI | CTAG | 3 cut(s) | 293, 477, 1022 |
| BfuAI | ACCTGC | 1 cut(s) | 1049 |
| BfuI | GTATCC | 1 cut(s) | 178 |
| BisI | GCNGC | 3 cut(s) | 76, 829, 1007 |
| BlsI | GCNGC | 3 cut(s) | 77, 830, 1008 |
| Bme1390I | CCNGG | 2 cut(s) | 259, 377 |
| Bme18I | GGWCC | 2 cut(s) | 4, 277 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 277, 687 |
| BmiI | GGNNCC | 2 cut(s) | 263, 279 |
| BmrFI | CCNGG | 2 cut(s) | 259, 377 |
| BmsI | GCATC | 3 cut(s) | 141, 249, 684 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 239, 271 |
| BpmI | CTGGAG | 1 cut(s) | 241 |
| BpuEI | CTTGAG | 1 cut(s) | 933 |
| BpuMI | CCSGG | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 1 cut(s) | 442 |
| BsaWI | WCCGGW | 3 cut(s) | 136, 159, 364 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 770, 800, 1023, 1053, 1128, 1158 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 177, 444, 740, 1175 |
| Bse118I | RCCGGY | 2 cut(s) | 136, 1175 |
| Bse1I | ACTGG | 2 cut(s) | 719, 1169 |
| Bse3DI | GCAATG | 3 cut(s) | 424, 506, 657 |
| BseBI | CCWGG | 1 cut(s) | 259 |
| BseDI | CCNNGG | 1 cut(s) | 442 |
| BseGI | GGATG | 1 cut(s) | 337 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 177, 444, 740, 1175 |
| BseMI | GCAATG | 3 cut(s) | 424, 506, 657 |
| BseMII | CTCAG | 1 cut(s) | 693 |
| BseNI | ACTGG | 2 cut(s) | 719, 1169 |
| BseRI | GAGGAG | 1 cut(s) | 794 |
| BseXI | GCAGC | 2 cut(s) | 87, 1018 |
| BsgI | GTGCAG | 1 cut(s) | 1077 |
| BshFI | GGCC | 1 cut(s) | 689 |
| BshTI | ACCGGT | 1 cut(s) | 136 |
| BsiHKAI | GWGCWC | 1 cut(s) | 654 |
| BsiSI | CCGG | 5 cut(s) | 137, 160, 365, 377, 1176 |
| BslFI | GGGAC | 2 cut(s) | 461, 598 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 177, 444, 740, 1175 |
| BsmAI | GTCTC | 1 cut(s) | 1148 |
| BsmFI | GGGAC | 2 cut(s) | 461, 598 |
| BsnI | GGCC | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 1 cut(s) | 654 |
| Bsp143I | GATC | 6 cut(s) | 189, 196, 313, 322, 372, 1078 |
| BspACI | CCGC | 4 cut(s) | 65, 776, 828, 889 |
| BspANI | GGCC | 1 cut(s) | 689 |
| BspCNI | CTCAG | 1 cut(s) | 692 |
| BspHI | TCATGA | 1 cut(s) | 790 |
| BspLI | GGNNCC | 2 cut(s) | 263, 279 |
| BspMI | ACCTGC | 1 cut(s) | 1049 |
| BspPI | GGATC | 5 cut(s) | 191, 321, 330, 367, 1073 |
| BsrDI | GCAATG | 3 cut(s) | 424, 506, 657 |
| BsrFI | RCCGGY | 2 cut(s) | 136, 1175 |
| BsrI | ACTGG | 2 cut(s) | 719, 1169 |
| BssAI | RCCGGY | 2 cut(s) | 136, 1175 |
| BssECI | CCNNGG | 1 cut(s) | 442 |
| BssMI | GATC | 6 cut(s) | 189, 196, 313, 322, 372, 1078 |
| BssT1I | CCWWGG | 1 cut(s) | 442 |
| Bst2UI | CCWGG | 1 cut(s) | 259 |
| BstC8I | GCNNGC | 2 cut(s) | 528, 891 |
| BstDEI | CTNAG | 5 cut(s) | 210, 671, 679, 851, 880 |
| BstF5I | GGATG | 1 cut(s) | 337 |
| BstKTI | GATC | 6 cut(s) | 192, 199, 316, 325, 375, 1081 |
| BstMAI | GTCTC | 1 cut(s) | 1148 |
| BstMBI | GATC | 6 cut(s) | 189, 196, 313, 322, 372, 1078 |
| BstNI | CCWGG | 1 cut(s) | 259 |
| BstSCI | CCNGG | 2 cut(s) | 257, 375 |
| BstV1I | GCAGC | 2 cut(s) | 87, 1018 |
| BstX2I | RGATCY | 1 cut(s) | 313 |
| BstYI | RGATCY | 1 cut(s) | 313 |
| BsuI | GTATCC | 1 cut(s) | 178 |
| BsuRI | GGCC | 1 cut(s) | 689 |
| BtsCI | GGATG | 1 cut(s) | 337 |
| BtsI | GCAGTG | 1 cut(s) | 1186 |
| BtsIMutI | CAGTG | 2 cut(s) | 712, 1186 |
| BveI | ACCTGC | 1 cut(s) | 1049 |
| Cac8I | GCNNGC | 2 cut(s) | 528, 891 |
| CciI | TCATGA | 1 cut(s) | 790 |
| Cfr10I | RCCGGY | 2 cut(s) | 136, 1175 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 277, 687 |
| Csp6I | GTAC | 2 cut(s) | 226, 988 |
| CspAI | ACCGGT | 1 cut(s) | 136 |
| CviAII | CATG | 4 cut(s) | 61, 471, 642, 791 |
| CviQI | GTAC | 2 cut(s) | 226, 988 |
| DdeI | CTNAG | 5 cut(s) | 210, 671, 679, 851, 880 |
| DpnI | GATC | 6 cut(s) | 191, 198, 315, 324, 374, 1080 |
| DpnII | GATC | 6 cut(s) | 189, 196, 313, 322, 372, 1078 |
| EciI | GGCGGA | 2 cut(s) | 80, 791 |
| Eco130I | CCWWGG | 1 cut(s) | 442 |
| Eco47I | GGWCC | 2 cut(s) | 4, 277 |
| Eco57I | CTGAAG | 2 cut(s) | 205, 338 |
| EcoRI | GAATTC | 1 cut(s) | 92 |
| EcoRII | CCWGG | 1 cut(s) | 257 |
| EcoT14I | CCWWGG | 1 cut(s) | 442 |
| ErhI | CCWWGG | 1 cut(s) | 442 |
| FaeI | CATG | 4 cut(s) | 64, 474, 645, 794 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 203, 235 |
| FaqI | GGGAC | 2 cut(s) | 461, 598 |
| FatI | CATG | 4 cut(s) | 60, 470, 641, 790 |
| FauI | CCCGC | 1 cut(s) | 882 |
| FblI | GTMKAC | 1 cut(s) | 1188 |
| Fnu4HI | GCNGC | 3 cut(s) | 76, 829, 1007 |
| FokI | GGATG | 1 cut(s) | 344 |
| Fsp4HI | GCNGC | 3 cut(s) | 76, 829, 1007 |
| FspBI | CTAG | 3 cut(s) | 293, 477, 1022 |
| GluI | GCNGC | 3 cut(s) | 76, 829, 1007 |
| GsuI | CTGGAG | 1 cut(s) | 241 |
| HaeIII | GGCC | 1 cut(s) | 689 |
| HapII | CCGG | 5 cut(s) | 137, 160, 365, 377, 1176 |
| Hin1II | CATG | 4 cut(s) | 64, 474, 645, 794 |
| HincII | GTYRAC | 1 cut(s) | 720 |
| HindII | GTYRAC | 1 cut(s) | 720 |
| HinfI | GANTC | 9 cut(s) | 14, 121, 156, 466, 551, 799, 946, 993, 1114 |
| HpaI | GTTAAC | 1 cut(s) | 720 |
| HpaII | CCGG | 5 cut(s) | 137, 160, 365, 377, 1176 |
| HphI | GGTGA | 4 cut(s) | 235, 611, 943, 1158 |
| Hpy166II | GTNNAC | 3 cut(s) | 720, 1147, 1189 |
| Hpy188I | TCNGA | 5 cut(s) | 118, 189, 196, 318, 1196 |
| Hpy188III | TCNNGA | 3 cut(s) | 791, 1022, 1099 |
| Hpy8I | GTNNAC | 3 cut(s) | 720, 1147, 1189 |
| Hpy99I | CGWCG | 2 cut(s) | 101, 104 |
| HpyAV | CCTTC | 5 cut(s) | 304, 313, 640, 700, 913 |
| HpyCH4V | TGCA | 5 cut(s) | 417, 474, 712, 1006, 1058 |
| HpyF3I | CTNAG | 5 cut(s) | 210, 671, 679, 851, 880 |
| Hsp92II | CATG | 4 cut(s) | 64, 474, 645, 794 |
| KspAI | GTTAAC | 1 cut(s) | 720 |
| Kzo9I | GATC | 6 cut(s) | 189, 196, 313, 322, 372, 1078 |
| LmnI | GCTCC | 5 cut(s) | 260, 267, 657, 704, 1136 |
| Lsp1109I | GCAGC | 2 cut(s) | 87, 1018 |
| LweI | GCATC | 3 cut(s) | 141, 249, 684 |
| MaeI | CTAG | 3 cut(s) | 293, 477, 1022 |
| MaeIII | GTNAC | 3 cut(s) | 492, 1105, 1171 |
| MalI | GATC | 6 cut(s) | 191, 198, 315, 324, 374, 1080 |
| MboI | GATC | 6 cut(s) | 189, 196, 313, 322, 372, 1078 |
| MboII | GAAGA | 1 cut(s) | 614 |
| MflI | RGATCY | 1 cut(s) | 313 |
| MhlI | GDGCHC | 1 cut(s) | 654 |
| MlyI | GAGTC | 3 cut(s) | 940, 987, 1108 |
| MnlI | CCTC | 6 cut(s) | 61, 123, 291, 717, 734, 772 |
| MroXI | GAANNNNTTC | 1 cut(s) | 218 |
| MseI | TTAA | 4 cut(s) | 57, 425, 719, 873 |
| MslI | CAYNNNNRTG | 1 cut(s) | 330 |
| MspI | CCGG | 5 cut(s) | 137, 160, 365, 377, 1176 |
| MspR9I | CCNGG | 2 cut(s) | 259, 377 |
| MvaI | CCWGG | 1 cut(s) | 259 |
| NciI | CCSGG | 1 cut(s) | 377 |
| NdeII | GATC | 6 cut(s) | 189, 196, 313, 322, 372, 1078 |
| NlaIII | CATG | 4 cut(s) | 64, 474, 645, 794 |
| NlaIV | GGNNCC | 2 cut(s) | 263, 279 |
| PagI | TCATGA | 1 cut(s) | 790 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 102 |
| PdmI | GAANNNNTTC | 1 cut(s) | 218 |
| PfeI | GAWTC | 6 cut(s) | 14, 121, 156, 466, 551, 799 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 177 |
| PfoI | TCCNGGA | 1 cut(s) | 375 |
| PinAI | ACCGGT | 1 cut(s) | 136 |
| PkrI | GCNGC | 3 cut(s) | 77, 830, 1008 |
| PleI | GAGTC | 3 cut(s) | 940, 987, 1108 |
| PpsI | GAGTC | 3 cut(s) | 940, 987, 1108 |
| PsiI | TTATAA | 1 cut(s) | 396 |
| Psp6I | CCWGG | 1 cut(s) | 257 |
| PspGI | CCWGG | 1 cut(s) | 257 |
| PspN4I | GGNNCC | 2 cut(s) | 263, 279 |
| PspPI | GGNCC | 3 cut(s) | 4, 277, 687 |
| PsuI | RGATCY | 1 cut(s) | 313 |
| RsaI | GTAC | 2 cut(s) | 227, 989 |
| RsaNI | GTAC | 2 cut(s) | 226, 988 |
| RseI | CAYNNNNRTG | 1 cut(s) | 330 |
| SaqAI | TTAA | 4 cut(s) | 57, 425, 719, 873 |
| SatI | GCNGC | 3 cut(s) | 76, 829, 1007 |
| Sau3AI | GATC | 6 cut(s) | 189, 196, 313, 322, 372, 1078 |
| Sau96I | GGNCC | 3 cut(s) | 4, 277, 687 |
| SchI | GAGTC | 3 cut(s) | 940, 987, 1108 |
| ScrFI | CCNGG | 2 cut(s) | 259, 377 |
| SduI | GDGCHC | 1 cut(s) | 654 |
| SfaNI | GCATC | 3 cut(s) | 141, 249, 684 |
| SinI | GGWCC | 2 cut(s) | 4, 277 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 330 |
| SmlI | CTYRAG | 1 cut(s) | 948 |
| SmoI | CTYRAG | 1 cut(s) | 948 |
| SsiI | CCGC | 4 cut(s) | 65, 776, 828, 889 |
| SspMI | CTAG | 3 cut(s) | 293, 477, 1022 |
| StyD4I | CCNGG | 2 cut(s) | 257, 375 |
| StyI | CCWWGG | 1 cut(s) | 442 |
| TaqI | TCGA | 2 cut(s) | 96, 739 |
| TatI | WGTACW | 1 cut(s) | 987 |
| TauI | GCSGC | 1 cut(s) | 831 |
| TfiI | GAWTC | 6 cut(s) | 14, 121, 156, 466, 551, 799 |
| Tru1I | TTAA | 4 cut(s) | 57, 425, 719, 873 |
| Tru9I | TTAA | 4 cut(s) | 57, 425, 719, 873 |
| TscAI | CASTG | 2 cut(s) | 719, 1186 |
| TseI | GCWGC | 2 cut(s) | 75, 1006 |
| TspDTI | ATGAA | 5 cut(s) | 65, 630, 779, 932, 1137 |
| TspGWI | ACGGA | 1 cut(s) | 427 |
| TspRI | CASTG | 2 cut(s) | 719, 1186 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 177 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 277 |
| XapI | RAATTY | 3 cut(s) | 52, 92, 975 |
| XbaI | TCTAGA | 1 cut(s) | 1021 |
| XmiI | GTMKAC | 1 cut(s) | 1188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 218 |
| XspI | CTAG | 3 cut(s) | 293, 477, 1022 |