divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_rugosa | Rorug05G0430100 |
| rosa_samantha | Rh5DG520700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 80 |
| AciI | CCGC | 1 cut(s) | 259 |
| AcvI | CACGTG | 1 cut(s) | 26 |
| AfaI | GTAC | 2 cut(s) | 307, 316 |
| AflIII | ACRYGT | 3 cut(s) | 23, 25, 325 |
| AgsI | TTSAA | 1 cut(s) | 332 |
| AluBI | AGCT | 1 cut(s) | 236 |
| AluI | AGCT | 1 cut(s) | 236 |
| AspLEI | GCGC | 1 cut(s) | 81 |
| AsuHPI | GGTGA | 1 cut(s) | 179 |
| AxyI | CCTNAGG | 1 cut(s) | 287 |
| BbrPI | CACGTG | 1 cut(s) | 26 |
| BccI | CCATC | 2 cut(s) | 158, 164 |
| BceAI | ACGGC | 1 cut(s) | 206 |
| BfaI | CTAG | 1 cut(s) | 346 |
| BsaAI | YACGTR | 1 cut(s) | 26 |
| BsaWI | WCCGGW | 1 cut(s) | 275 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 15, 45 |
| Bse21I | CCTNAGG | 1 cut(s) | 287 |
| BseMII | CTCAG | 1 cut(s) | 278 |
| BseRI | GAGGAG | 5 cut(s) | 23, 26, 277, 280, 304 |
| BsiSI | CCGG | 1 cut(s) | 276 |
| BspACI | CCGC | 1 cut(s) | 259 |
| BspCNI | CTCAG | 1 cut(s) | 279 |
| Bst4CI | ACNGT | 1 cut(s) | 108 |
| Bst6I | CTCTTC | 1 cut(s) | 16 |
| BstBAI | YACGTR | 1 cut(s) | 26 |
| BstDEI | CTNAG | 1 cut(s) | 287 |
| BstHHI | GCGC | 1 cut(s) | 81 |
| BstNSI | RCATGY | 1 cut(s) | 329 |
| Bsu36I | CCTNAGG | 1 cut(s) | 287 |
| CfoI | GCGC | 1 cut(s) | 81 |
| Csp6I | GTAC | 2 cut(s) | 306, 315 |
| CviAII | CATG | 3 cut(s) | 113, 142, 326 |
| CviJI | RGCY | 1 cut(s) | 236 |
| CviKI_1 | RGCY | 1 cut(s) | 236 |
| CviQI | GTAC | 2 cut(s) | 306, 315 |
| DdeI | CTNAG | 1 cut(s) | 287 |
| Eam1104I | CTCTTC | 1 cut(s) | 16 |
| EarI | CTCTTC | 1 cut(s) | 16 |
| Eco72I | CACGTG | 1 cut(s) | 26 |
| Eco81I | CCTNAGG | 1 cut(s) | 287 |
| FaeI | CATG | 3 cut(s) | 116, 145, 329 |
| FaiI | YATR | 7 cut(s) | 72, 89, 114, 143, 194, 323, 327 |
| FatI | CATG | 3 cut(s) | 112, 141, 325 |
| FspBI | CTAG | 1 cut(s) | 346 |
| FspI | TGCGCA | 1 cut(s) | 80 |
| GlaI | GCGC | 1 cut(s) | 80 |
| HapII | CCGG | 1 cut(s) | 276 |
| HhaI | GCGC | 1 cut(s) | 81 |
| Hin1II | CATG | 3 cut(s) | 116, 145, 329 |
| Hin6I | GCGC | 1 cut(s) | 79 |
| HinP1I | GCGC | 1 cut(s) | 79 |
| HinfI | GANTC | 1 cut(s) | 157 |
| HpaII | CCGG | 1 cut(s) | 276 |
| HphI | GGTGA | 1 cut(s) | 179 |
| Hpy188III | TCNNGA | 1 cut(s) | 161 |
| HpyAV | CCTTC | 1 cut(s) | 50 |
| HpyCH4III | ACNGT | 1 cut(s) | 108 |
| HpyCH4IV | ACGT | 1 cut(s) | 25 |
| HpyF3I | CTNAG | 1 cut(s) | 287 |
| HpySE526I | ACGT | 1 cut(s) | 25 |
| Hsp92II | CATG | 3 cut(s) | 116, 145, 329 |
| HspAI | GCGC | 1 cut(s) | 79 |
| LpnPI | CCDG | 6 cut(s) | 32, 174, 222, 235, 289, 299 |
| MaeI | CTAG | 1 cut(s) | 346 |
| MaeII | ACGT | 1 cut(s) | 25 |
| MaeIII | GTNAC | 2 cut(s) | 108, 130 |
| MboII | GAAGA | 1 cut(s) | 3 |
| MluCI | AATT | 2 cut(s) | 120, 151 |
| MmeI | TCCRAC | 1 cut(s) | 39 |
| MnlI | CCTC | 7 cut(s) | 44, 47, 69, 255, 258, 261, 282 |
| MslI | CAYNNNNRTG | 1 cut(s) | 144 |
| MspA1I | CMGCKG | 1 cut(s) | 236 |
| MspI | CCGG | 1 cut(s) | 276 |
| NlaIII | CATG | 3 cut(s) | 116, 145, 329 |
| NmuCI | GTSAC | 1 cut(s) | 130 |
| NsbI | TGCGCA | 1 cut(s) | 80 |
| NspI | RCATGY | 1 cut(s) | 329 |
| PciI | ACATGT | 1 cut(s) | 325 |
| PfeI | GAWTC | 1 cut(s) | 157 |
| PmaCI | CACGTG | 1 cut(s) | 26 |
| PmlI | CACGTG | 1 cut(s) | 26 |
| Ppu21I | YACGTR | 1 cut(s) | 26 |
| PscI | ACATGT | 1 cut(s) | 325 |
| PspCI | CACGTG | 1 cut(s) | 26 |
| PvuII | CAGCTG | 1 cut(s) | 236 |
| RsaI | GTAC | 2 cut(s) | 307, 316 |
| RsaNI | GTAC | 2 cut(s) | 306, 315 |
| RseI | CAYNNNNRTG | 1 cut(s) | 144 |
| SetI | ASST | 6 cut(s) | 28, 61, 238, 307, 316, 347 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 144 |
| Sse9I | AATT | 2 cut(s) | 120, 151 |
| SsiI | CCGC | 1 cut(s) | 259 |
| SspMI | CTAG | 1 cut(s) | 346 |
| TaaI | ACNGT | 1 cut(s) | 108 |
| TaiI | ACGT | 1 cut(s) | 28 |
| TasI | AATT | 2 cut(s) | 120, 151 |
| TfiI | GAWTC | 1 cut(s) | 157 |
| TseFI | GTSAC | 1 cut(s) | 130 |
| Tsp45I | GTSAC | 1 cut(s) | 130 |
| TspDTI | ATGAA | 1 cut(s) | 158 |
| XceI | RCATGY | 1 cut(s) | 329 |
| XspI | CTAG | 1 cut(s) | 346 |