Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016714

Physical Location & Seq

Genomic Coordinates Forward (+)

61495929 .. 61496183

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0443400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGATCAGTAAGGGTATTGCCCCAACTGTCATTACCTATAACACTCTCATCCATGGAGTTTGTAGATTAGGCCAGTGGAAGGAAGCTACGAGGTTGTTGAATGAAATGGTCAGTAAAATGATCTTTCCAGATGTGCACACCTTCACCGTCTTGGTAGATACACTCTGTAAGGAGGGGATGGCAGTGGAAGCAAAAGGCGTGATTGAAATGATGGTTCAAAGAGATATTGAATCTGATAAGGTTACATACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010152 GO:0010208 GO:0010584 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0021700 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043492 GO:0044085 GO:0044425 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

84

Amino Acids

9.46

Weight (kDa)

6.05

Isoelectric Point (pI)

21.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	3 - 55	5.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	4 - 37	2.1e-14	PPR repeat
PPR_2	PF13041	8 - 57	3.7e-19	PPR repeat family
PPR	PF01535	11 - 39	8.7e-09	PPR repeat
MRP-S27	PF10037	12 - 75	6.2e-06	Mitochondrial 28S ribosomal protein S27
PPR_1	PF12854	39 - 72	2.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13220
fragaria_vesca	FvH4_3g42410
malus_domestica	MD11G1036200.v1.1
prunus_persica	Prupe.6G027000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0075901
rosa_laevigata	RLG00000036600
rosa_multiflora	Rmu_sc0002652.1_g000018
rosa_roxburghii	Rroxscaffold_1G00005780
rosa_rugosa	Rorug05G0443400 Rorug05G0443500 Rorug05G0443600
rosa_samantha	Rh5CG545500 Rh5DG534200
rosa_wichuraiana	Rw5G046440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	100, 206, 218, 230
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	70
ApaLI	GTGCAC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BccI	CCATC	2 cut(s)	172, 205
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	48, 183
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	138
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	79
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	3, 120
Bsp19I	CCATGG	1 cut(s)	52
BspANI	GGCC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	3, 120
BssT1I	CCWWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	28, 148
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	48, 183
BstKTI	GATC	2 cut(s)	6, 123
BstMBI	GATC	2 cut(s)	3, 120
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	48, 183
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	80, 189
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	2 cut(s)	72, 86
CviKI_1	RGCY	2 cut(s)	72, 86
DpnI	GATC	2 cut(s)	5, 122
DpnII	GATC	2 cut(s)	3, 120
Eco130I	CCWWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	1 cut(s)	56
FaiI	YATR	3 cut(s)	39, 54, 247
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	2 cut(s)	35, 190
FspBI	CTAG	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	73, 151
HpyCH4III	ACNGT	2 cut(s)	28, 148
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 120
LpnPI	CCDG	2 cut(s)	86, 141
MaeI	CTAG	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	5, 122
MboI	GATC	2 cut(s)	3, 120
MhlI	GDGCHC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	84, 166
MwoI	GCNNNNNNNGC	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	52
NdeII	GATC	2 cut(s)	3, 120
NlaIII	CATG	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	3, 120
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	5 cut(s)	38, 88, 95, 143, 243
SgeI	CNNG	6 cut(s)	65, 85, 102, 140, 163, 211
SspMI	CTAG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	28, 148
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	2 cut(s)	80, 189
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	2 cut(s)	80, 189
VneI	GTGCAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.