Rorug05G0443500

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
61499022 .. 61499439
418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0443500.1

Sequence Viewer

Length: 207 bp
ATGGGCACCAATTTTTCTGAAGTCTACACTTGGTTGCACTTTAGCTCTGGTGATATAATTGAGAAGCTTCTCAGAATCATCAAAGAACAAAGACACCACTTCCACAACAAAATCTGGGTTGCTCTCATCTTAAAGCTGTTAAAGCTGCAAAACTTGGCCATCCAAAAGCCCCTTCTCTCCCAAAAACCCACCAGGAAACAAAAATGA

Protein Analysis

68

Amino Acids

8.12

Weight (kDa)

10.35

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016714)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13220
fragaria_vesca FvH4_3g42410
malus_domestica MD11G1036200.v1.1
prunus_persica Prupe.6G027000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075901
rosa_laevigata RLG00000036600
rosa_multiflora Rmu_sc0002652.1_g000018
rosa_roxburghii Rroxscaffold_1G00005780
rosa_rugosa Rorug05G0443400 Rorug05G0443500 Rorug05G0443600
rosa_samantha Rh5CG545500 Rh5DG534200
rosa_wichuraiana Rw5G046440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 39
AjnI CCWGG 1 cut(s) 191
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 4 cut(s) 45, 67, 136, 145
AluI AGCT 4 cut(s) 45, 67, 136, 145
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 193
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 8
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 159
CviJI RGCY 6 cut(s) 45, 67, 136, 145, 158, 169
CviKI_1 RGCY 6 cut(s) 45, 67, 136, 145, 158, 169
DdeI CTNAG 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 191
FaiI YATR 1 cut(s) 56
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 146
HaeIII GGCC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 1 cut(s) 75
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 19, 74
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 182
HpyCH4V TGCA 2 cut(s) 37, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 71
LpnPI CCDG 3 cut(s) 33, 100, 178
Lsp1109I GCAGC 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 2 cut(s) 10, 57
MluNI TGGCCA 1 cut(s) 158
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 2 cut(s) 131, 140
Msp20I TGGCCA 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 131, 140
SatI GCNGC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 47, 69, 138, 147
SgeI CNNG 4 cut(s) 42, 60, 127, 166
Sse9I AATT 2 cut(s) 10, 57
StyD4I CCNGG 1 cut(s) 191
TasI AATT 2 cut(s) 10, 57
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 131, 140
Tru9I TTAA 2 cut(s) 131, 140
TseI GCWGC 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.