Rorug07G0106600

molybdenum cofactor sulfurtransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014748
Physical Location & Seq
Forward (+)
8347392 .. 8348397
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0106600.1

Sequence Viewer

Length: 675 bp
ATGCTAATTATACTGATGCTGGCGCTGGTTCTTATTAGGTTCATAGAACCAATAGTATTCGGAGATTACCCAAAGATTATGAGAGATTTGGTCAAGGAAAGGCTACCCCTTTTCACTGAAGAAGAGAAAAAATTGATCAAGGGATCCTTCGATTTCATTGGCATCAACTATTATACCACGAGATATGGTAAAAACGTTCCAGCAAGTCAAGCTGAACCATTGAGTTATCACAATGACGCTTTGGCTACATCAACTGAAACAAATGCAAATGGAGTCTTAATTGGTCCTCTTGCTAATGGAAGCATCTACATCTTCTCTTATCCACAAGGTCTTCAGAAACTTTTGGAGTTCATTAAGCAAAACTACCAAAGTCCTAAAATCTACATTTCCGAAAATGGAATTACAGAAGAAAAGGACGATAATCTTGGACTCGATGTAGCAGTCAAGGATCCACATAGAATTGAATGCATTCTTCGACACTTGTACAGGATCAAGATGGCAATGAAGAATGGGGTGAATGTCAAAGGATATTTCCACTGGGCTCCATTCGATGACTTTGAGTGGGGGGAAGGCTATCTTGCAAGGTTCGGACTTTACTATGTCGACTACAAAGACAATCTCAAGCGCATTCCTAAAGAATCTGCTAAGTGGCTACCAAATTTCTTAAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.89

Weight (kDa)

7.73

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 12 - 221 3.5e-52 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014748)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21420 FvH4_5g21420
malus_domestica MD06G1028900.v1.1
prunus_persica Prupe.5G042900_v2.0.a1 Prupe.5G042900_v2.0.a1 Prupe.5G042900_v2.0.a1
pyrus_communis pycom06g02300
rosa_chinensis RchiOBHm_Chr7g0208851
rosa_laevigata RLG00000003192
rosa_multiflora Rmu_sc0023015.1_g000006
rosa_roxburghii Rroxscaffold_3G00250200
rosa_rugosa Rorug07G0106600
rosa_samantha Rh7AG241700 Rh7BG236300 Rh7CG256300 Rh7DG247800
rosa_wichuraiana Rw7G020470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 603
AclI AACGTT 1 cut(s) 195
AclWI GGATC 5 cut(s) 138, 151, 443, 456, 497
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 2 cut(s) 138, 317
AfaI GTAC 1 cut(s) 485
AgsI TTSAA 1 cut(s) 464
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
AlwI GGATC 5 cut(s) 138, 151, 443, 456, 497
ApoI RAATTY 1 cut(s) 658
Asp700I GAANNNNTTC 1 cut(s) 468
AspLEI GCGC 2 cut(s) 25, 627
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 284
BamHI GGATCC 2 cut(s) 143, 448
BanII GRGCYC 1 cut(s) 544
BauI CACGAG 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 323
BccI CCATC 1 cut(s) 490
BclI TGATCA 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 3 cut(s) 145, 450, 543
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 3 cut(s) 6, 171, 312
BmuI ACTGGG 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 542
Bse3DI GCAATG 1 cut(s) 507
BseMI GCAATG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 542
BsmI GAATGC 3 cut(s) 468, 470, 627
Bsp1286I GDGCHC 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 4 cut(s) 135, 143, 448, 489
BspLI GGNNCC 3 cut(s) 145, 450, 543
BspPI GGATC 5 cut(s) 138, 151, 443, 456, 497
BsrDI GCAATG 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 1 cut(s) 542
BssMI GATC 4 cut(s) 135, 143, 448, 489
BssSI CACGAG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 645
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 627
BstKTI GATC 4 cut(s) 138, 146, 451, 492
BstMBI GATC 4 cut(s) 135, 143, 448, 489
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 143, 448
BstYI RGATCY 2 cut(s) 143, 448
BtsIMutI CAGTG 2 cut(s) 114, 535
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 2 cut(s) 25, 627
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 484
CviJI RGCY 6 cut(s) 103, 212, 245, 542, 573, 652
CviKI_1 RGCY 6 cut(s) 103, 212, 245, 542, 573, 652
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 1 cut(s) 645
DpnI GATC 4 cut(s) 137, 145, 450, 491
DpnII GATC 4 cut(s) 135, 143, 448, 489
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 138, 317
EcoT22I ATGCAT 1 cut(s) 470
EcoT38I GRGCYC 1 cut(s) 544
FaiI YATR 7 cut(s) 11, 44, 80, 174, 186, 456, 600
FalI AAGNNNNNCTT 4 cut(s) 131, 163, 561, 593
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 1 cut(s) 603
FriOI GRGCYC 1 cut(s) 544
GlaI GCGC 2 cut(s) 24, 626
HaeII RGCGCY 1 cut(s) 26
HgaI GACGC 1 cut(s) 245
HhaI GCGC 2 cut(s) 25, 627
Hin6I GCGC 2 cut(s) 23, 625
HinP1I GCGC 2 cut(s) 23, 625
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 3 cut(s) 273, 429, 638
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 4 cut(s) 62, 336, 391, 590
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 1 cut(s) 604
HpyAV CCTTC 2 cut(s) 157, 563
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 266, 468, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 1 cut(s) 195
HspAI GCGC 2 cut(s) 23, 625
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 4 cut(s) 135, 143, 448, 489
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 5 cut(s) 5, 11, 213, 472, 523
LweI GCATC 3 cut(s) 6, 171, 312
MaeII ACGT 1 cut(s) 195
MalI GATC 4 cut(s) 137, 145, 450, 491
MboI GATC 4 cut(s) 135, 143, 448, 489
MboII GAAGA 7 cut(s) 131, 134, 304, 323, 419, 464, 517
MflI RGATCY 2 cut(s) 143, 448
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 6 cut(s) 6, 131, 279, 399, 459, 658
MlyI GAGTC 2 cut(s) 282, 423
MnlI CCTC 1 cut(s) 297
Mph1103I ATGCAT 1 cut(s) 470
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 3 cut(s) 278, 354, 665
Mva1269I GAATGC 3 cut(s) 468, 470, 627
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 4 cut(s) 135, 143, 448, 489
NlaIV GGNNCC 3 cut(s) 145, 450, 543
NsiI ATGCAT 1 cut(s) 470
PctI GAATGC 3 cut(s) 468, 470, 627
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 1 cut(s) 638
PleI GAGTC 2 cut(s) 281, 423
PpsI GAGTC 2 cut(s) 281, 423
Psp1406I AACGTT 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 145, 450, 543
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 2 cut(s) 143, 448
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SalI GTCGAC 1 cut(s) 602
SaqAI TTAA 3 cut(s) 278, 354, 665
Sau3AI GATC 4 cut(s) 135, 143, 448, 489
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 2 cut(s) 282, 423
SduI GDGCHC 1 cut(s) 544
SetI ASST 5 cut(s) 41, 198, 214, 331, 587
SfaNI GCATC 3 cut(s) 6, 171, 312
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 6 cut(s) 6, 131, 279, 399, 459, 658
TaiI ACGT 1 cut(s) 198
TaqI TCGA 5 cut(s) 150, 432, 475, 549, 603
TasI AATT 6 cut(s) 6, 131, 279, 399, 459, 658
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 3 cut(s) 278, 354, 665
Tru9I TTAA 3 cut(s) 278, 354, 665
TscAI CASTG 2 cut(s) 121, 542
TspDTI ATGAA 4 cut(s) 31, 145, 340, 518
TspRI CASTG 2 cut(s) 121, 542
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 603
XmnI GAANNNNTTC 1 cut(s) 468
Zsp2I ATGCAT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.