Rorug07G0154300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0022775
Physical Location & Seq
Reverse (-)
12214211 .. 12214687
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0154300.1

Sequence Viewer

Length: 477 bp
ATGACCGTTTTTGGTCTCACTGTGATGAAAGTCAAGAACCCGAAGTTGAGATTGGGTGCAATCAATGTCCAAGACCTTAACTCTGCCCCTGCAACACCTTCATTTGACACAACCTTCACAACACAAATCAGGGTCAAGAACACGAATTGGGGTCCATATAAATTTGATGCCGGCACAATAACATTCATGTACCAAGGGGTGGCTATTGGGCAAGTTACTGTTCCTAAGAGCAAGGCTGGTATGCGTTCCACCAAGAAGATGAATGTCAAAGTGAGTCTGAATGCTAATGGATTGCCAAGCAGTTCGAATCTTGGCAGTGAATTGAACAGTGGGGTCTTGATGCTGAACAGCCAAGCCAAATTGACCGGAAAGGTTGAATTGATGCTCATAATGAAGAAGAAGAAGTCTGCCACAATGGACTGCACTATAGCTTTCAATTTGTCCACTAAGACTGTCAAAAGTTTAGAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.09

Weight (kDa)

10.13

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 43 - 142 1.5e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022775)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0026481
rosa_rugosa Rorug01G0219400 Rorug07G0154300
rosa_samantha Rh5DG185500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 3 cut(s) 325, 377, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 431
AluI AGCT 1 cut(s) 431
Alw26I GTCTC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 3 cut(s) 157, 330, 372
Bpu14I TTCGAA 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 406
BsiSI CCGG 2 cut(s) 171, 366
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 20
BsmI GAATGC 2 cut(s) 286, 473
Bso31I GGTCTC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 193
Bst4CI ACNGT 5 cut(s) 7, 22, 220, 329, 454
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 225, 447
BstMAI GTCTC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 3 cut(s) 18, 322, 334
Cac8I GCNNGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 187
CviJI RGCY 5 cut(s) 203, 236, 351, 356, 431
CviKI_1 RGCY 5 cut(s) 203, 236, 351, 356, 431
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 225, 447
Eco130I CCWWGG 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 1 cut(s) 190
FaiI YATR 6 cut(s) 157, 159, 188, 242, 389, 428
FatI CATG 1 cut(s) 186
HapII CCGG 2 cut(s) 171, 366
Hin1II CATG 1 cut(s) 190
HinfI GANTC 2 cut(s) 274, 307
HpaII CCGG 2 cut(s) 171, 366
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 3 cut(s) 34, 136, 337
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 2 cut(s) 108, 124
HpyCH4III ACNGT 5 cut(s) 7, 22, 220, 329, 454
HpyCH4V TGCA 4 cut(s) 59, 92, 423, 471
HpyF3I CTNAG 2 cut(s) 225, 447
Hsp92II CATG 1 cut(s) 190
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 102, 115, 184, 222, 379
LweI GCATC 3 cut(s) 157, 330, 372
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 4 cut(s) 268, 406, 409, 412
MluCI AATT 6 cut(s) 145, 161, 320, 359, 377, 436
MlyI GAGTC 1 cut(s) 283
MroNI GCCGGC 1 cut(s) 170
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 2 cut(s) 171, 366
Mva1269I GAATGC 2 cut(s) 286, 473
NaeI GCCGGC 1 cut(s) 172
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 153
NspV TTCGAA 1 cut(s) 305
PctI GAATGC 2 cut(s) 286, 473
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 199
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 152
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 283
SetI ASST 5 cut(s) 78, 100, 116, 375, 433
SfaNI GCATC 3 cut(s) 157, 330, 372
SfcI CTRYAG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 6 cut(s) 145, 161, 320, 359, 377, 436
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 5 cut(s) 7, 22, 220, 329, 454
TaqI TCGA 1 cut(s) 305
TasI AATT 6 cut(s) 145, 161, 320, 359, 377, 436
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 3 cut(s) 25, 322, 334
TspDTI ATGAA 5 cut(s) 41, 90, 175, 275, 407
TspRI CASTG 3 cut(s) 25, 322, 334
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.