Rh5DG185500

Large proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0022775
Physical Location & Seq
Forward (+)
20606396 .. 20607120
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG185500.1

Sequence Viewer

Length: 162 bp
ATGGTCCCCAGGCATCAGTATGAGCTGAGAAGAATGGGAAGTAATGGTGCTAAACATATTCCAATGAGTGAGCAGATGGATGGGTCTAAACCTACAGTTGAGATAAAAATAAAGACATTGGATCACAAACCTATACTCTCAAAGTGCATAAAGAGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000280 GO:0001655 GO:0001775 GO:0001822 GO:0002020 GO:0002253 GO:0002376 GO:0002429 GO:0002474 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0006996 GO:0007029 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007130 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007417 GO:0007420 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008630 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010604 GO:0010605 GO:0010941 GO:0012501 GO:0016020 GO:0016043 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0019882 GO:0019899 GO:0019941 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023052 GO:0030101 GO:0030162 GO:0030163 GO:0030323 GO:0030324 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031325 GO:0031329 GO:0031330 GO:0031331 GO:0031593 GO:0031625 GO:0031647 GO:0031974 GO:0031981 GO:0031982 GO:0032268 GO:0032269 GO:0032270 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0035295 GO:0035556 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036506 GO:0042176 GO:0042177 GO:0042221 GO:0042771 GO:0042802 GO:0042981 GO:0043021 GO:0043022 GO:0043066 GO:0043067 GO:0043069 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0045048 GO:0045132 GO:0045143 GO:0045184 GO:0045321 GO:0045732 GO:0045861 GO:0045862 GO:0045995 GO:0046649 GO:0048002 GO:0048232 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050821 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051205 GO:0051234 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051276 GO:0051321 GO:0051603 GO:0051641 GO:0051704 GO:0051716 GO:0051787 GO:0051788 GO:0060255 GO:0060322 GO:0060541 GO:0060548 GO:0061024 GO:0061136 GO:0061857 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070059 GO:0070062 GO:0070192 GO:0070193 GO:0070628 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0071816 GO:0071818 GO:0071840 GO:0072001 GO:0072331 GO:0072332 GO:0072379 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:0097190 GO:0097193 GO:0098813 GO:0140013 GO:0140030 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1901800 GO:1903046 GO:1903050 GO:1903051 GO:1903052 GO:1903362 GO:1903363 GO:1903364 GO:1903561 GO:1904292 GO:1904294 GO:1904378 GO:1905897 GO:1905898 GO:1990381 GO:2000026 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

53

Amino Acids

6.1

Weight (kDa)

10.01

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022775)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0026481
rosa_rugosa Rorug01G0219400 Rorug07G0154300
rosa_samantha Rh5DG185500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
AlwI GGATC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BccI CCATC 2 cut(s) 70, 74
BciT130I CCWGG 1 cut(s) 10
BfmI CTRYAG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 8
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 17
Bsp143I GATC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 1 cut(s) 25
CviKI_1 RGCY 1 cut(s) 25
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 8
FaiI YATR 4 cut(s) 21, 57, 134, 149
FokI GGATG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 26
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 1 cut(s) 22
LweI GCATC 1 cut(s) 22
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 42
MseI TTAA 1 cut(s) 160
MslI CAYNNNNRTG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
NdeII GATC 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 160
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 10
SetI ASST 3 cut(s) 27, 94, 133
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 93
SgeI CNNG 2 cut(s) 21, 22
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 97
Tru1I TTAA 1 cut(s) 160
Tru9I TTAA 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.