Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000008

Orthogroup ID

OG0026712

Physical Location & Seq

Genomic Coordinates Forward (+)

1753 .. 9800

Gene Structure 8048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RorugPtG0000300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTTTGTTATGCTTAATATTTTAAGTTTGATCTGTATCTACCTTAATTCTGCTCTTTATTCCAGTAGTTTTTTCGTCGCAAAATTGCCCGAAGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATGCCAGTAATACCCCTGTTCTTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_A_CTD RNA_pol_A_bac RNA_pol_L

Protein Analysis

64

Amino Acids

7.31

Weight (kDa)

5.82

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbK	PF02533	24 - 64	5e-24	Photosystem II 4 kDa reaction centre component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026712)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g09470
rosa_rugosa	RorugPtG0000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	63, 131
Bse8I	GATNNNNATC	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	63, 131
BseXI	GCAGC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	63, 131
BssMI	GATC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	174
CviJI	RGCY	3 cut(s)	95, 161, 176
CviKI_1	RGCY	3 cut(s)	95, 161, 176
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
FaiI	YATR	2 cut(s)	11, 128
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	76, 144, 155
Lsp1109I	GCAGC	1 cut(s)	163
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MfeI	CAATTG	1 cut(s)	114
MluCI	AATT	3 cut(s)	46, 83, 114
MseI	TTAA	3 cut(s)	15, 23, 45
MunI	CAATTG	1 cut(s)	114
NdeII	GATC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	178
SaqAI	TTAA	3 cut(s)	15, 23, 45
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	30
SetI	ASST	2 cut(s)	45, 178
SgeI	CNNG	5 cut(s)	75, 101, 143, 154, 185
Sse9I	AATT	3 cut(s)	46, 83, 114
SspI	AATATT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	46, 83, 114
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	3 cut(s)	15, 23, 45
Tru9I	TTAA	3 cut(s)	15, 23, 45
TseI	GCWGC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.