Rh1AG005400

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0032853
Physical Location & Seq
Reverse (-)
719039 .. 735742
16704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG005400.1

Sequence Viewer

Length: 1002 bp
ATGAAAAGGCTGGAGAGGCTAGTAATGGTGGCAATTTGGTGCATACAAGAGGATCCATCTTTGAGACCTACCATGAAGAAGCTAGTCTTCAATGAGTCGGGTCATATCAACGTTGTTCTGCGGAATGGAAATATAGTAACCCTCACAAACAAAACCGTATCGCCATCAAGAGATTACTATTACAGAGCAACACTAGATTTTGATGGGCTTTTTACCCTATATGGTTATCCAAAAAAAGGGAGCGGGACATCCTGGTCCTCTTTGTGGTCTATCCCAGAAAACATTTGCTTCGCCTTCGATTCAACTGGAGAGGAGGGCGGCGGGCCATGTGGATATAACAGTTACTGCAGACTTGATGCAAACACAAGGCCAATTTGTGAATGCGTTCCTGGCTTTTCTGCTTTAGATCCCCAATATAAGTTGCGCGGCTGCAAACAAAACAGGATGCACAGTTGTGAACTAGGTGATTCAAAGCCACAAGATGTATATGTGATGCATGAGCTACCAAATACTTTCTGGCCCTCTTCTTCAAACTTTGAAGTATTGCAGCAACTCAATGAAGATGATTGTAGGAGGTCTTGCCTCGATGATTGTAACTGTGTGGTAGCTGTTATCAGAGCTGGGAGCTGCTGGAAGAAGAAACTGCCACTCTCCAATGGAAGGCAGGACTGGAATGAGTATGGCAAGGCTCTCATCAAAATACCAAAATCTGATGCTTTTGAGAACCCTGCATCTCGAGATTCAAACACAGAAAAGAAAGATCAGAAAACTGTCATCTTATTCAACTCAGCCGACCAGAGGATCCGTCTTAGCCTTGACATAGTCAATCACCTAATAAATACAATCCGTGTTTTTGTATGGGCAGCAACTGCTCAGGAAACTCCAATTGACGCTACATCACTTGGACGTGCAGCGTACAACGGGAACCTCCTCTCTAATTGCCATATTCCACTTGATATTTCAGGAATCAAATTTAAGGCACGCCGCACTGCGAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

333

Amino Acids

37.58

Weight (kDa)

8.58

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 164 - 202 4.2e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032853)

Species Orthologous Gene IDs
rosa_samantha Rh1AG005400 Rh1BG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 253
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 1 cut(s) 426
AciI CCGC 6 cut(s) 121, 243, 318, 321, 426, 985
AclI AACGTT 1 cut(s) 111
AclWI GGATC 5 cut(s) 47, 60, 401, 796, 809
AcsI RAATTY 1 cut(s) 971
AfaI GTAC 1 cut(s) 917
AfiI CCNNNNNNNGG 4 cut(s) 236, 264, 660, 798
AgsI TTSAA 7 cut(s) 91, 303, 471, 531, 539, 744, 784
AjiI CACGTC 1 cut(s) 908
AjnI CCWGG 2 cut(s) 251, 388
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 5 cut(s) 82, 502, 608, 620, 627
AluI AGCT 5 cut(s) 82, 502, 608, 620, 627
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 5 cut(s) 47, 60, 401, 796, 809
AlwNI CAGNNNCTG 2 cut(s) 345, 869
Ama87I CYCGRG 1 cut(s) 735
AoxI GGCC 3 cut(s) 323, 368, 518
ApeKI GCWGC 5 cut(s) 429, 547, 627, 863, 911
ApoI RAATTY 1 cut(s) 971
Asp700I GAANNNNTTC 1 cut(s) 384
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 3 cut(s) 255, 323, 519
AsuHPI GGTGA 2 cut(s) 476, 821
AvaI CYCGRG 1 cut(s) 735
AvaII GGWCC 1 cut(s) 255
BamHI GGATCC 2 cut(s) 52, 801
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 5 cut(s) 416, 559, 614, 875, 923
BccI CCATC 3 cut(s) 64, 172, 197
BciT130I CCWGG 2 cut(s) 253, 390
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 4 cut(s) 20, 83, 194, 461
BfmI CTRYAG 1 cut(s) 346
BisI GCNGC 8 cut(s) 319, 427, 430, 548, 628, 864, 912, 985
BlsI GCNGC 8 cut(s) 320, 428, 431, 549, 629, 865, 913, 986
Bme1390I CCNGG 2 cut(s) 253, 390
Bme18I GGWCC 1 cut(s) 255
BmeT110I CYCGRG 1 cut(s) 735
BmgBI CACGTC 1 cut(s) 908
BmgT120I GGNCC 3 cut(s) 255, 323, 519
BmiI GGNNCC 3 cut(s) 54, 803, 926
BmrFI CCNGG 2 cut(s) 253, 390
BmsI GCATC 5 cut(s) 346, 435, 483, 703, 740
BpiI GAAGAC 1 cut(s) 79
BpmI CTGGAG 2 cut(s) 32, 327
Bpu10I CCTNAGC 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 58
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 264, 660, 798
Bse1I ACTGG 2 cut(s) 310, 674
BseBI CCWGG 2 cut(s) 253, 390
BseGI GGATG 2 cut(s) 248, 450
BseLI CCNNNNNNNGG 4 cut(s) 236, 264, 660, 798
BseMII CTCAG 2 cut(s) 801, 887
BseNI ACTGG 2 cut(s) 310, 674
BseRI GAGGAG 2 cut(s) 326, 920
BseXI GCAGC 5 cut(s) 416, 559, 614, 875, 923
BseYI CCCAGC 1 cut(s) 620
BsgI GTGCAG 1 cut(s) 930
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 3 cut(s) 325, 370, 520
BsiHKCI CYCGRG 1 cut(s) 735
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 4 cut(s) 236, 264, 660, 798
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 3 cut(s) 325, 370, 520
Bso31I GGTCTC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 735
Bsp143I GATC 4 cut(s) 52, 406, 760, 801
BspACI CCGC 6 cut(s) 121, 243, 318, 321, 426, 985
BspANI GGCC 3 cut(s) 325, 370, 520
BspCNI CTCAG 2 cut(s) 800, 886
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 54, 803, 926
BspMAI CTGCAG 1 cut(s) 350
BspPI GGATC 5 cut(s) 47, 60, 401, 796, 809
BspTNI GGTCTC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 243
BsrI ACTGG 2 cut(s) 310, 674
BssMI GATC 4 cut(s) 52, 406, 760, 801
Bst2UI CCWGG 2 cut(s) 253, 390
Bst4CI ACNGT 5 cut(s) 157, 341, 452, 599, 772
Bst6I CTCTTC 1 cut(s) 529
BstAPI GCANNNNNTGC 1 cut(s) 869
BstC8I GCNNGC 2 cut(s) 323, 982
BstDEI CTNAG 3 cut(s) 787, 809, 873
BstF5I GGATG 2 cut(s) 248, 450
BstFNI CGCG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 4 cut(s) 55, 409, 763, 804
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 4 cut(s) 52, 406, 760, 801
BstMWI GCNNNNNNNGC 3 cut(s) 16, 390, 869
BstNI CCWGG 2 cut(s) 253, 390
BstSCI CCNGG 2 cut(s) 251, 388
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 5 cut(s) 416, 559, 614, 875, 923
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 3 cut(s) 52, 406, 801
BstYI RGATCY 3 cut(s) 52, 406, 801
BsuRI GGCC 3 cut(s) 325, 370, 520
BtrI CACGTC 1 cut(s) 908
BtsCI GGATG 2 cut(s) 248, 450
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 2 cut(s) 987, 997
Cac8I GCNNGC 2 cut(s) 323, 982
CaiI CAGNNNCTG 2 cut(s) 345, 869
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 3 cut(s) 255, 323, 519
CseI GACGC 1 cut(s) 899
Csp6I GTAC 1 cut(s) 916
CviAII CATG 3 cut(s) 73, 327, 497
CviQI GTAC 1 cut(s) 916
DdeI CTNAG 3 cut(s) 787, 809, 873
DpnI GATC 4 cut(s) 54, 408, 762, 803
DpnII GATC 4 cut(s) 52, 406, 760, 801
DrdI GACNNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 735
EcoRII CCWGG 2 cut(s) 251, 388
EcoT22I ATGCAT 1 cut(s) 498
FaeI CATG 3 cut(s) 76, 330, 500
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 1 cut(s) 259
FatI CATG 3 cut(s) 72, 326, 496
FauI CCCGC 2 cut(s) 236, 314
Fnu4HI GCNGC 8 cut(s) 319, 427, 430, 548, 628, 864, 912, 985
FokI GGATG 2 cut(s) 235, 457
Fsp4HI GCNGC 8 cut(s) 319, 427, 430, 548, 628, 864, 912, 985
FspBI CTAG 4 cut(s) 20, 83, 194, 461
GlaI GCGC 1 cut(s) 425
GluI GCNGC 8 cut(s) 319, 427, 430, 548, 628, 864, 912, 985
GsaI CCCAGC 1 cut(s) 624
GsuI CTGGAG 2 cut(s) 32, 327
HaeIII GGCC 3 cut(s) 325, 370, 520
HgaI GACGC 1 cut(s) 899
HhaI GCGC 1 cut(s) 426
Hin1II CATG 3 cut(s) 76, 330, 500
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 5 cut(s) 95, 299, 467, 740, 966
HphI GGTGA 2 cut(s) 476, 821
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 3 cut(s) 617, 712, 765
Hpy188III TCNNGA 5 cut(s) 168, 735, 737, 875, 963
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 304, 654
HpyCH4III ACNGT 5 cut(s) 157, 341, 452, 599, 772
HpyCH4IV ACGT 2 cut(s) 111, 907
HpyCH4V TGCA 9 cut(s) 42, 348, 359, 432, 448, 496, 547, 731, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 390, 869
HpyF3I CTNAG 3 cut(s) 787, 809, 873
HpySE526I ACGT 2 cut(s) 111, 907
Hsp92II CATG 3 cut(s) 76, 330, 500
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 4 cut(s) 52, 406, 760, 801
LmnI GCTCC 2 cut(s) 240, 624
Lsp1109I GCAGC 5 cut(s) 416, 559, 614, 875, 923
LweI GCATC 5 cut(s) 346, 435, 483, 703, 740
MaeI CTAG 4 cut(s) 20, 83, 194, 461
MaeII ACGT 2 cut(s) 111, 907
MaeIII GTNAC 3 cut(s) 136, 341, 593
MalI GATC 4 cut(s) 54, 408, 762, 803
MbiI CCGCTC 1 cut(s) 243
MboI GATC 4 cut(s) 52, 406, 760, 801
MboII GAAGA 7 cut(s) 79, 88, 516, 519, 572, 646, 649
MfeI CAATTG 1 cut(s) 885
MflI RGATCY 3 cut(s) 52, 406, 801
MluCI AATT 5 cut(s) 33, 372, 885, 937, 971
MlyI GAGTC 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 1 cut(s) 975
MslI CAYNNNNRTG 1 cut(s) 453
MspR9I CCNGG 2 cut(s) 253, 390
MunI CAATTG 1 cut(s) 885
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 2 cut(s) 253, 390
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 3 cut(s) 16, 390, 869
NdeII GATC 4 cut(s) 52, 406, 760, 801
NlaIII CATG 3 cut(s) 76, 330, 500
NlaIV GGNNCC 3 cut(s) 54, 803, 926
NsiI ATGCAT 1 cut(s) 498
OliI CACNNNNGTG 1 cut(s) 453
PaeR7I CTCGAG 1 cut(s) 735
PctI GAATGC 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 4 cut(s) 299, 467, 740, 966
PflFI GACNNNGTC 1 cut(s) 821
PkrI GCNGC 8 cut(s) 320, 428, 431, 549, 629, 865, 913, 986
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp1406I AACGTT 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 251, 388
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 2 cut(s) 251, 388
PspN4I GGNNCC 3 cut(s) 54, 803, 926
PspPI GGNCC 3 cut(s) 255, 323, 519
PstI CTGCAG 1 cut(s) 350
PstNI CAGNNNCTG 2 cut(s) 345, 869
PsuI RGATCY 3 cut(s) 52, 406, 801
PsyI GACNNNGTC 1 cut(s) 821
RsaI GTAC 1 cut(s) 917
RsaNI GTAC 1 cut(s) 916
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 975
SatI GCNGC 8 cut(s) 319, 427, 430, 548, 628, 864, 912, 985
Sau3AI GATC 4 cut(s) 52, 406, 760, 801
Sau96I GGNCC 3 cut(s) 255, 323, 519
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 253, 390
SfaNI GCATC 5 cut(s) 346, 435, 483, 703, 740
SfcI CTRYAG 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 735
SinI GGWCC 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
Sse9I AATT 5 cut(s) 33, 372, 885, 937, 971
SsiI CCGC 6 cut(s) 121, 243, 318, 321, 426, 985
SspMI CTAG 4 cut(s) 20, 83, 194, 461
StyD4I CCNGG 2 cut(s) 251, 388
TaaI ACNGT 5 cut(s) 157, 341, 452, 599, 772
TaiI ACGT 2 cut(s) 114, 910
TaqI TCGA 3 cut(s) 297, 585, 736
TasI AATT 5 cut(s) 33, 372, 885, 937, 971
TauI GCSGC 3 cut(s) 321, 429, 987
TfiI GAWTC 4 cut(s) 299, 467, 740, 966
Tru1I TTAA 1 cut(s) 975
Tru9I TTAA 1 cut(s) 975
TscAI CASTG 1 cut(s) 994
TseI GCWGC 5 cut(s) 429, 547, 627, 863, 911
TspDTI ATGAA 3 cut(s) 17, 89, 573
TspGWI ACGGA 2 cut(s) 794, 836
TspRI CASTG 1 cut(s) 994
Tth111I GACNNNGTC 1 cut(s) 821
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 971
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XhoI CTCGAG 1 cut(s) 735
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 4 cut(s) 20, 83, 194, 461
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.