Rh1BG347200

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0032853
Physical Location & Seq
Forward (+)
48048917 .. 48064659
15743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG347200.1

Sequence Viewer

Length: 774 bp
ATGAACTCTGGTTATCAGCTAGCCTTCGATGAGTCAGGTCAAATCAATGTTGTTCTGAGGAATGGAAATATATCAATCCTCTCAAACAAAACACCATCCTCATCAAGTGATTACTATTACAGAGCAACACTAGATTCCGATGGGCTCTTTACCCAATACGCTCATTCAAAGTCCCAAAAAAATGGGAATTGGACACCCTGGATTCCTCTGTGGTCTATCCCAGAAAATATTTGCTCAGCTTCAACTGGAGACGCGGGCGGCGGGCCATGTGGATATAACAGCTACTGCAGACTTGATGCAAACACAAGGCCAATTTGTGAATGCGTTCCTGGCTTTTCTCCTTTAGATCCCGAATATAAGTTGCGCGGCTGCAAACAAGACAGGATAAACAGTTGTGAACCACAAGATGTGTATGTGATCCGTGAGCTACAAAGTACTTTCTGGCCCAGTTCTGTAAACTATGAAGATTTGCGGGGACTCAATGAAGATAATTGTAGCAGAAACTGCCTCGACGATTGTAACTGTGTCGTGGCTGTTATATTCGATGGGGGCTGCAAGAAGAAGAAACTGCCACTCTCGAATGGAAAGGTAGACTGGAATATGTACTGCAAGGCTCTCGTCAAAGTACCAAAATCTGCTGATGCTTTTGAGAATCCTGCATCTCGAGATTCAAACGCAGAGAAGAAAGATCAGAAAACTCTCGTCTTAACTGTAAAATCCAACCGTCACGTCGCCGCCTGCAACACCCCGTGGAAGGGTAAGTACTACCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

257

Amino Acids

28.68

Weight (kDa)

8.13

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 35 - 114 2.2e-06 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032853)

Species Orthologous Gene IDs
rosa_samantha Rh1AG005400 Rh1BG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 591
AccII CGCG 2 cut(s) 254, 366
AciI CCGC 6 cut(s) 254, 258, 261, 366, 472, 735
AclWI GGATC 2 cut(s) 341, 412
AdeI CACNNNGTG 1 cut(s) 750
AfaI GTAC 4 cut(s) 436, 605, 627, 764
AfiI CCNNNNNNNGG 2 cut(s) 754, 755
AgeI ACCGGT 1 cut(s) 768
AgsI TTSAA 3 cut(s) 168, 243, 672
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 2 cut(s) 197, 328
AluBI AGCT 4 cut(s) 19, 239, 282, 427
AluI AGCT 4 cut(s) 19, 239, 282, 427
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 2 cut(s) 341, 412
AlwNI CAGNNNCTG 2 cut(s) 285, 504
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 3 cut(s) 263, 308, 443
ApeKI GCWGC 2 cut(s) 369, 552
AsiGI ACCGGT 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 263, 444
AsuNHI GCTAGC 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 663
BanII GRGCYC 1 cut(s) 147
BarI GAAGNNNNNNTAC 1 cut(s) 746
BbvI GCAGC 2 cut(s) 356, 539
BccI CCATC 3 cut(s) 103, 134, 539
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 2 cut(s) 199, 330
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 2 cut(s) 20, 131
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 5 cut(s) 259, 367, 370, 553, 735
BlpI GCTNAGC 1 cut(s) 235
BlsI GCNGC 5 cut(s) 260, 368, 371, 554, 736
BmcAI AGTACT 2 cut(s) 436, 764
Bme1390I CCNGG 2 cut(s) 199, 330
BmeT110I CYCGRG 1 cut(s) 663
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 263, 444
BmrFI CCNGG 2 cut(s) 199, 330
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 3 cut(s) 286, 631, 668
BmtI GCTAGC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 197, 749
BsaWI WCCGGW 1 cut(s) 768
Bsc4I CCNNNNNNNGG 2 cut(s) 754, 755
Bse118I RCCGGY 1 cut(s) 768
Bse1I ACTGG 3 cut(s) 250, 447, 599
BseBI CCWGG 2 cut(s) 199, 330
BseDI CCNNGG 2 cut(s) 197, 749
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 754, 755
BseMII CTCAG 2 cut(s) 47, 249
BseNI ACTGG 3 cut(s) 250, 447, 599
BseXI GCAGC 2 cut(s) 356, 539
Bsh1236I CGCG 2 cut(s) 254, 366
BshFI GGCC 3 cut(s) 265, 310, 445
BshTI ACCGGT 1 cut(s) 768
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 1 cut(s) 769
BslFI GGGAC 2 cut(s) 157, 489
BslI CCNNNNNNNGG 2 cut(s) 754, 755
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 2 cut(s) 157, 489
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 3 cut(s) 265, 310, 445
BsoBI CYCGRG 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 346, 417, 688
Bsp1720I GCTNAGC 1 cut(s) 235
BspACI CCGC 6 cut(s) 254, 258, 261, 366, 472, 735
BspANI GGCC 3 cut(s) 265, 310, 445
BspCNI CTCAG 2 cut(s) 48, 248
BspFNI CGCG 2 cut(s) 254, 366
BspMAI CTGCAG 1 cut(s) 290
BspOI GCTAGC 1 cut(s) 23
BspPI GGATC 2 cut(s) 341, 412
BsrFI RCCGGY 1 cut(s) 768
BsrI ACTGG 3 cut(s) 250, 447, 599
BssAI RCCGGY 1 cut(s) 768
BssECI CCNNGG 2 cut(s) 197, 749
BssMI GATC 3 cut(s) 346, 417, 688
Bst2UI CCWGG 2 cut(s) 199, 330
Bst4CI ACNGT 4 cut(s) 392, 524, 712, 725
BstAPI GCANNNNNTGC 1 cut(s) 504
BstC8I GCNNGC 4 cut(s) 21, 256, 263, 739
BstDEI CTNAG 2 cut(s) 56, 235
BstDSI CCRYGG 1 cut(s) 749
BstF5I GGATG 1 cut(s) 95
BstFNI CGCG 2 cut(s) 254, 366
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 3 cut(s) 349, 420, 691
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 3 cut(s) 346, 417, 688
BstMWI GCNNNNNNNGC 2 cut(s) 330, 504
BstNI CCWGG 2 cut(s) 199, 330
BstSCI CCNGG 2 cut(s) 197, 328
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 2 cut(s) 254, 366
BstV1I GCAGC 2 cut(s) 356, 539
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 3 cut(s) 265, 310, 445
BtgI CCRYGG 1 cut(s) 749
BtrI CACGTC 1 cut(s) 730
BtsCI GGATG 1 cut(s) 95
Cac8I GCNNGC 4 cut(s) 21, 256, 263, 739
CaiI CAGNNNCTG 2 cut(s) 285, 504
CfoI GCGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 768
Cfr13I GGNCC 2 cut(s) 263, 444
CseI GACGC 1 cut(s) 260
Csp6I GTAC 4 cut(s) 435, 604, 626, 763
CspAI ACCGGT 1 cut(s) 768
CviAII CATG 1 cut(s) 267
CviQI GTAC 4 cut(s) 435, 604, 626, 763
DdeI CTNAG 2 cut(s) 56, 235
DpnI GATC 3 cut(s) 348, 419, 690
DpnII GATC 3 cut(s) 346, 417, 688
DraIII CACNNNGTG 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 663
EcoRII CCWGG 2 cut(s) 197, 328
EcoT38I GRGCYC 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 1 cut(s) 270
FaiI YATR 8 cut(s) 71, 268, 276, 357, 414, 462, 539, 602
FaqI GGGAC 2 cut(s) 157, 489
FatI CATG 1 cut(s) 266
FauI CCCGC 3 cut(s) 247, 254, 465
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 5 cut(s) 259, 367, 370, 553, 735
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 5 cut(s) 259, 367, 370, 553, 735
FspBI CTAG 2 cut(s) 20, 131
GlaI GCGC 1 cut(s) 365
GluI GCNGC 5 cut(s) 259, 367, 370, 553, 735
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 3 cut(s) 265, 310, 445
HapII CCGG 1 cut(s) 769
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 366
Hin1II CATG 1 cut(s) 270
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 6 cut(s) 32, 134, 202, 477, 652, 668
HpaII CCGG 1 cut(s) 769
Hpy166II GTNNAC 3 cut(s) 398, 457, 592
Hpy188I TCNGA 3 cut(s) 57, 139, 693
Hpy188III TCNNGA 4 cut(s) 350, 577, 663, 665
Hpy8I GTNNAC 3 cut(s) 398, 457, 592
Hpy99I CGWCG 2 cut(s) 515, 734
HpyAV CCTTC 2 cut(s) 34, 748
HpyCH4III ACNGT 4 cut(s) 392, 524, 712, 725
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 7 cut(s) 288, 299, 372, 555, 609, 659, 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 504
HpyF3I CTNAG 2 cut(s) 56, 235
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 1 cut(s) 270
HspAI GCGC 1 cut(s) 364
Kzo9I GATC 3 cut(s) 346, 417, 688
Lsp1109I GCAGC 2 cut(s) 356, 539
LweI GCATC 3 cut(s) 286, 631, 668
MaeI CTAG 2 cut(s) 20, 131
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 2 cut(s) 518, 725
MalI GATC 3 cut(s) 348, 419, 690
MboI GATC 3 cut(s) 346, 417, 688
MboII GAAGA 5 cut(s) 476, 497, 571, 574, 694
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 3 cut(s) 187, 312, 490
MlyI GAGTC 2 cut(s) 41, 471
MmeI TCCRAC 1 cut(s) 744
MnlI CCTC 5 cut(s) 51, 89, 109, 216, 518
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 707
MspI CCGG 1 cut(s) 769
MspR9I CCNGG 2 cut(s) 199, 330
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 2 cut(s) 199, 330
MvnI CGCG 2 cut(s) 254, 366
MwoI GCNNNNNNNGC 2 cut(s) 330, 504
NdeII GATC 3 cut(s) 346, 417, 688
NheI GCTAGC 1 cut(s) 19
NlaIII CATG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 725
PaeR7I CTCGAG 1 cut(s) 663
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 4 cut(s) 134, 202, 652, 668
PinAI ACCGGT 1 cut(s) 768
PkrI GCNGC 5 cut(s) 260, 368, 371, 554, 736
PleI GAGTC 2 cut(s) 40, 471
PpsI GAGTC 2 cut(s) 40, 471
Psp6I CCWGG 2 cut(s) 197, 328
PspGI CCWGG 2 cut(s) 197, 328
PspPI GGNCC 2 cut(s) 263, 444
PstI CTGCAG 1 cut(s) 290
PstNI CAGNNNCTG 2 cut(s) 285, 504
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 4 cut(s) 436, 605, 627, 764
RsaNI GTAC 4 cut(s) 435, 604, 626, 763
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 5 cut(s) 259, 367, 370, 553, 735
Sau3AI GATC 3 cut(s) 346, 417, 688
Sau96I GGNCC 2 cut(s) 263, 444
ScaI AGTACT 2 cut(s) 436, 764
SchI GAGTC 2 cut(s) 41, 471
ScrFI CCNGG 2 cut(s) 199, 330
SduI GDGCHC 1 cut(s) 147
SetI ASST 7 cut(s) 21, 40, 241, 284, 429, 591, 732
SfaNI GCATC 3 cut(s) 286, 631, 668
SfcI CTRYAG 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 663
SlaI CTCGAG 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 663
SmoI CTYRAG 1 cut(s) 663
Sse9I AATT 3 cut(s) 187, 312, 490
SsiI CCGC 6 cut(s) 254, 258, 261, 366, 472, 735
SspI AATATT 1 cut(s) 229
SspMI CTAG 2 cut(s) 20, 131
StyD4I CCNGG 2 cut(s) 197, 328
TaaI ACNGT 4 cut(s) 392, 524, 712, 725
TaiI ACGT 1 cut(s) 732
TaqI TCGA 5 cut(s) 27, 510, 543, 578, 664
TasI AATT 3 cut(s) 187, 312, 490
TatI WGTACW 3 cut(s) 434, 603, 762
TauI GCSGC 3 cut(s) 261, 369, 737
TfiI GAWTC 4 cut(s) 134, 202, 652, 668
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TseFI GTSAC 1 cut(s) 725
TseI GCWGC 2 cut(s) 369, 552
Tsp45I GTSAC 1 cut(s) 725
TspDTI ATGAA 3 cut(s) 17, 477, 498
TspGWI ACGGA 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 663
XmiI GTMKAC 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 2 cut(s) 20, 131
ZrmI AGTACT 2 cut(s) 436, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.