Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0032889

Physical Location & Seq

Genomic Coordinates Reverse (-)

25795859 .. 25798594

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCAGTTGCTAATCATGAACGAAGGTTGAAGGACAAGACTGACAAGGTGACCAAGTGGAAGGAAGCTTTAGTAAAAGCAGCTAACCTATCTGGGTTTGATTCAACTTCAAAAAAATTTCGGATCGATCTTAGTTTCTCCATTTTCCTCGCCGATGTTGGAGAGCTGTCAAATAGTGTAAACATTGAGAGTATAAATCTTCAAGGCTGTAGTAGTTTGGTTCAAGTTCCGGATTTGTCAAAGTGTGTATACATTAAGAGTATAAATCTCCTAGGCTGTGCAAGTTTGGTTCAAGTTCCAGACCTGTCAAAAAGTGTAAACATTGAGAGTATAAATCTTCAAAGCTGCGGAGATTTGGTTCAAGTTCCTTCATACTTTCAAAAGTTTACCAAGCTTACTTATCTGAATTTGGGATTTTGCTCGAAGATTAGTGTTCTACCAAAGTTACCAAGCAAGATGGAGTTCTTAGATTTAAATGAAACTGCAGTAGAAGAATTGCCTCCATCAATTTTTTCTCTTGAAAAACTTCTTAAATTGAATCTTCATGGATGCAGTTCCATTATATATCTTTCGAGCAGTCCATGGAAGATGAAATCCCTGAATTATCTTTCTTTGAGCGAGACATGTATAGAAACGGTGCCCTCATCATTGTTCAAGTGTATGACTGGGCTCATTTCAGTTGACCTGAGTGATTGTCATTGCCTCGTCAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

238

Amino Acids

26.28

Weight (kDa)

7.47

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	85 - 208	7.2e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032889)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG135600 Rh1DG141000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	637
AccI	GTMKAC	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	116, 406
AflIII	ACRYGT	1 cut(s)	623
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	5 cut(s)	68, 83, 166, 345, 394
AluI	AGCT	5 cut(s)	68, 83, 166, 345, 394
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	714
Aor13HI	TCCGGA	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	80, 345
ApoI	RAATTY	2 cut(s)	116, 406
Asp700I	GAANNNNTTC	1 cut(s)	525
AspA2I	CCTAGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	61
AvrII	CCTAGG	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	642
BanI	GGYRCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	92, 332
BccI	CCATC	2 cut(s)	451, 511
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	2 cut(s)	208, 483
BisI	GCNGC	2 cut(s)	81, 346
BlnI	CCTAGG	1 cut(s)	271
BlsI	GCNGC	2 cut(s)	82, 347
BmiI	GGNNCC	1 cut(s)	639
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	675
Bsa29I	ATCGAT	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	271, 581
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bse1I	ACTGG	2 cut(s)	5, 670
Bse3DI	GCAATG	1 cut(s)	697
BseAI	TCCGGA	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	271, 581
BseGI	GGATG	1 cut(s)	554
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	2 cut(s)	5, 670
BseSI	GKGCMC	1 cut(s)	642
BseXI	GCAGC	2 cut(s)	92, 332
BshNI	GGYRCC	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	614
Bsp1286I	GDGCHC	2 cut(s)	642, 672
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	123, 127
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	678
BspDI	ATCGAT	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	5, 670
BssECI	CCNNGG	2 cut(s)	271, 581
BssMI	GATC	2 cut(s)	123, 127
BssNAI	GTATAC	1 cut(s)	250
BssT1I	CCWWGG	2 cut(s)	271, 581
Bst1107I	GTATAC	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	637
BstDEI	CTNAG	3 cut(s)	131, 466, 686
BstDSI	CCRYGG	1 cut(s)	581
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	554
BstKTI	GATC	2 cut(s)	126, 130
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	2 cut(s)	123, 127
BstNSI	RCATGY	1 cut(s)	627
BstPI	GGTNACC	1 cut(s)	49
BstSFI	CTRYAG	2 cut(s)	208, 483
BstSLI	GKGCMC	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	92, 332
BstZ17I	GTATAC	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	554
CaiI	CAGNNNCTG	1 cut(s)	714
CciI	TCATGA	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	126
CviAII	CATG	4 cut(s)	17, 545, 582, 624
CviJI	RGCY	8 cut(s)	68, 83, 166, 207, 276, 345, 394, 670
CviKI_1	RGCY	8 cut(s)	68, 83, 166, 207, 276, 345, 394, 670
DdeI	CTNAG	3 cut(s)	131, 466, 686
DpnI	GATC	2 cut(s)	125, 129
DpnII	GATC	2 cut(s)	123, 127
DraI	TTTAAA	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	271, 581
Eco24I	GRGCYC	1 cut(s)	672
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	271, 581
EcoT38I	GRGCYC	1 cut(s)	672
ErhI	CCWWGG	2 cut(s)	271, 581
FaeI	CATG	4 cut(s)	20, 548, 585, 627
FatI	CATG	4 cut(s)	16, 544, 581, 623
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	81, 346
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	2 cut(s)	81, 346
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	2 cut(s)	81, 346
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	4 cut(s)	20, 548, 585, 627
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	2 cut(s)	66, 392
HinfI	GANTC	2 cut(s)	101, 538
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	5 cut(s)	181, 250, 319, 387, 682
Hpy188I	TCNGA	3 cut(s)	123, 405, 716
Hpy188III	TCNNGA	4 cut(s)	17, 230, 299, 518
Hpy8I	GTNNAC	5 cut(s)	181, 250, 319, 387, 682
HpyAV	CCTTC	4 cut(s)	18, 25, 55, 378
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4V	TGCA	3 cut(s)	281, 485, 552
HpyF3I	CTNAG	3 cut(s)	131, 466, 686
Hsp92II	CATG	4 cut(s)	20, 548, 585, 627
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	123, 127
LpnPI	CCDG	8 cut(s)	18, 78, 243, 312, 317, 611, 651, 698
Lsp1109I	GCAGC	2 cut(s)	92, 332
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	49, 444
MalI	GATC	2 cut(s)	125, 129
MboI	GATC	2 cut(s)	123, 127
MboII	GAAGA	6 cut(s)	191, 329, 436, 503, 533, 598
MhlI	GDGCHC	2 cut(s)	642, 672
MluCI	AATT	6 cut(s)	116, 406, 494, 507, 533, 601
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	158, 510, 652, 713
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	3 cut(s)	255, 473, 531
MspI	CCGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	2 cut(s)	123, 127
NlaIII	CATG	4 cut(s)	20, 548, 585, 627
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	627
PagI	TCATGA	1 cut(s)	16
PciI	ACATGT	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	101, 538
PkrI	GCNGC	2 cut(s)	82, 347
PscI	ACATGT	1 cut(s)	623
PspEI	GGTNACC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	714
SaqAI	TTAA	3 cut(s)	255, 473, 531
SatI	GCNGC	2 cut(s)	81, 346
Sau3AI	GATC	2 cut(s)	123, 127
SduI	GDGCHC	2 cut(s)	642, 672
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	2 cut(s)	208, 483
SmiI	ATTTAAAT	1 cut(s)	474
Sse9I	AATT	6 cut(s)	116, 406, 494, 507, 533, 601
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	271, 581
SwaI	ATTTAAAT	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	637
TaqI	TCGA	3 cut(s)	126, 422, 572
TasI	AATT	6 cut(s)	116, 406, 494, 507, 533, 601
TfiI	GAWTC	2 cut(s)	101, 538
Tru1I	TTAA	3 cut(s)	255, 473, 531
Tru9I	TTAA	3 cut(s)	255, 473, 531
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	80, 345
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	5 cut(s)	33, 360, 492, 533, 605
XapI	RAATTY	2 cut(s)	116, 406
XceI	RCATGY	1 cut(s)	627
XmaJI	CCTAGG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.