Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0032889

Physical Location & Seq

Genomic Coordinates Reverse (-)

29748545 .. 29751227

Gene Structure 2683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG141000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCCAGTTGCTAATCATGAACGAAGGTTGAAGGACAAGACTGACAAGGTGACCAAGTGGAAGGAAGCTTTAGTAAAAGCAGCTAACCTATCTGGGTTTGATTCAACTTCAAAAAAATTTTCGAATCCTGATAAGTTGAAAAGGATCGATCTTAGTTTCTCCATTTTCCTCGCCGATGTTGGAGAGCTGTCAAATAGTGTAAACATTGAGAGTATAAATCTTCAAGGCTGTAGTAGTTTGGTTCAAGTTCCGGATTTGTCAAAGTGTGTATACATTAAGAGTATAAATCTCCTAGGCTGTGCAAGTTTGGTTCAAGTTCCAGACCTGTCAAAGAGTGTAAACATTGAGAGTATAAATCTTCAAAGCTGCGGAGATTTGGTTCAAGTTCCTTCATACTTTCAAAAGTTTACCAAGCTTACTTATCTGAATTTGGGATTTTGCTCGAAGATTAGTGTTCTACCAAAGTTACCAAGCAAGATGGAGTTCTTAGATTTAAATGAAACTGCAGTAGAAGAATTGCCTCCATCAATTTTTTCTCTTGAAAAACTTCTTAAATTGAATCTTCATGGATGCAGTTCCATTATATATCTTTCGAGCAGTCCATGGAAGATGAAATCCCTGAATTATCTTTCTTTGAGCGAGACATGTATAGAAACGGTTCCCTCACATTGTTCAAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

227

Amino Acids

25.11

Weight (kDa)

8.35

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	92 - 215	6.4e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0032889)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG135600 Rh1DG141000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	116, 427
AflIII	ACRYGT	1 cut(s)	644
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	5 cut(s)	68, 83, 187, 366, 415
AluI	AGCT	5 cut(s)	68, 83, 187, 366, 415
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	80, 366
ApoI	RAATTY	2 cut(s)	116, 427
Asp700I	GAANNNNTTC	2 cut(s)	546, 657
AspA2I	CCTAGG	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	122
AvrII	CCTAGG	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	92, 353
BccI	CCATC	2 cut(s)	472, 532
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	2 cut(s)	229, 504
BisI	GCNGC	2 cut(s)	81, 367
BlnI	CCTAGG	1 cut(s)	292
BlsI	GCNGC	2 cut(s)	82, 368
BmiI	GGNNCC	1 cut(s)	660
BmsI	GCATC	1 cut(s)	560
Bpu14I	TTCGAA	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	292, 602
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bse1I	ACTGG	1 cut(s)	5
BseAI	TCCGGA	1 cut(s)	250
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	292, 602
BseGI	GGATG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	5
BseXI	GCAGC	2 cut(s)	92, 353
BshVI	ATCGAT	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	635
Bsp119I	TTCGAA	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	144, 148
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	1 cut(s)	369
BspDI	ATCGAT	1 cut(s)	147
BspEI	TCCGGA	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	660
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	292, 602
BssMI	GATC	2 cut(s)	144, 148
BssNAI	GTATAC	1 cut(s)	271
BssT1I	CCWWGG	2 cut(s)	292, 602
Bst1107I	GTATAC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	658
BstBI	TTCGAA	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	152, 487
BstDSI	CCRYGG	1 cut(s)	602
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	575
BstKTI	GATC	2 cut(s)	147, 151
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	2 cut(s)	144, 148
BstNSI	RCATGY	1 cut(s)	648
BstPI	GGTNACC	1 cut(s)	49
BstSFI	CTRYAG	2 cut(s)	229, 504
BstV1I	GCAGC	2 cut(s)	92, 353
BstZ17I	GTATAC	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	147
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	575
CciI	TCATGA	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	147
CviAII	CATG	4 cut(s)	17, 566, 603, 645
CviJI	RGCY	7 cut(s)	68, 83, 187, 228, 297, 366, 415
CviKI_1	RGCY	7 cut(s)	68, 83, 187, 228, 297, 366, 415
DdeI	CTNAG	2 cut(s)	152, 487
DpnI	GATC	2 cut(s)	146, 150
DpnII	GATC	2 cut(s)	144, 148
DraI	TTTAAA	1 cut(s)	495
Eco130I	CCWWGG	2 cut(s)	292, 602
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	292, 602
ErhI	CCWWGG	2 cut(s)	292, 602
FaeI	CATG	4 cut(s)	20, 569, 606, 648
FatI	CATG	4 cut(s)	16, 565, 602, 644
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	81, 367
FokI	GGATG	1 cut(s)	582
Fsp4HI	GCNGC	2 cut(s)	81, 367
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	2 cut(s)	81, 367
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	4 cut(s)	20, 569, 606, 648
HindIII	AAGCTT	2 cut(s)	66, 413
HinfI	GANTC	3 cut(s)	101, 124, 559
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	4 cut(s)	202, 271, 340, 408
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	5 cut(s)	17, 128, 251, 320, 539
Hpy8I	GTNNAC	4 cut(s)	202, 271, 340, 408
HpyAV	CCTTC	4 cut(s)	18, 25, 55, 399
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4V	TGCA	3 cut(s)	302, 506, 573
HpyF3I	CTNAG	2 cut(s)	152, 487
Hsp92II	CATG	4 cut(s)	20, 569, 606, 648
Kpn2I	TCCGGA	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	144, 148
LpnPI	CCDG	7 cut(s)	18, 78, 141, 264, 333, 338, 632
Lsp1109I	GCAGC	2 cut(s)	92, 353
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	49, 465
MalI	GATC	2 cut(s)	146, 150
MboI	GATC	2 cut(s)	144, 148
MboII	GAAGA	6 cut(s)	212, 350, 457, 524, 554, 619
MluCI	AATT	6 cut(s)	116, 427, 515, 528, 554, 622
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	179, 531, 673
MroI	TCCGGA	1 cut(s)	250
MroXI	GAANNNNTTC	2 cut(s)	546, 657
MseI	TTAA	3 cut(s)	276, 494, 552
MspI	CCGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	602
NdeII	GATC	2 cut(s)	144, 148
NlaIII	CATG	4 cut(s)	20, 569, 606, 648
NlaIV	GGNNCC	1 cut(s)	660
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	648
NspV	TTCGAA	1 cut(s)	122
PagI	TCATGA	1 cut(s)	16
PciI	ACATGT	1 cut(s)	644
PdmI	GAANNNNTTC	2 cut(s)	546, 657
PfeI	GAWTC	3 cut(s)	101, 124, 559
PkrI	GCNGC	2 cut(s)	82, 368
PscI	ACATGT	1 cut(s)	644
PspEI	GGTNACC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	508
SaqAI	TTAA	3 cut(s)	276, 494, 552
SatI	GCNGC	2 cut(s)	81, 367
Sau3AI	GATC	2 cut(s)	144, 148
SetI	ASST	9 cut(s)	29, 51, 70, 85, 90, 189, 327, 368, 417
SfaNI	GCATC	1 cut(s)	560
SfcI	CTRYAG	2 cut(s)	229, 504
SfuI	TTCGAA	1 cut(s)	122
SmiI	ATTTAAAT	1 cut(s)	495
Sse9I	AATT	6 cut(s)	116, 427, 515, 528, 554, 622
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	292, 602
SwaI	ATTTAAAT	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	658
TaqI	TCGA	4 cut(s)	122, 147, 443, 593
TasI	AATT	6 cut(s)	116, 427, 515, 528, 554, 622
TfiI	GAWTC	3 cut(s)	101, 124, 559
Tru1I	TTAA	3 cut(s)	276, 494, 552
Tru9I	TTAA	3 cut(s)	276, 494, 552
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	80, 366
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	5 cut(s)	33, 381, 513, 554, 626
XapI	RAATTY	2 cut(s)	116, 427
XceI	RCATGY	1 cut(s)	648
XmaJI	CCTAGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	2 cut(s)	546, 657
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.