Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0032892

Physical Location & Seq

Genomic Coordinates Reverse (-)

26903753 .. 26907913

Gene Structure 4161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATCAGATCTTCTTCTAGCTTCAATTGTCTGTTTCATATCAATTTCATCAGTTTTCAGACGATGTTCAATCCAAGTTCAATTGTGATTAGGGCCTGTACTGTGCTCGGCGCCTACGGTGGTGGCAATAGCACTTTCTCATCCTCGTGGGAAGCCCTGCCTTCTGTTGCCGTCGTCGGCGGCCAGCCGCGGTTCGGAAGGAAATTCAGGATGAAACCGATAAGACTAGCAGGAAGGTCAAAAATGATATCTTCTGTTCCTATCCATCTCAGTATCTACTCGCCCAACGAGGGCCAGCCTGAAAGTATTGTTGAAGATATTGAAAACATGGTTCGATCTTATGTTGAGAAGCCTAATAGCATCATACTATCAATATCTCCAGCCAACCAATCGCTACATCTGATGCTACCGAACTTGCATGGGAAGTGGATGCAGCAGGTGAACGAACGAGCTAATATTGTGGATGTTATTGAAGGAAGATCTTATCGCCTGCAACGTCCTTGGAATGGGTTCAGACTTAAGAGTACCTTGCTAAACTTCTGTCATAGCAATTGGAGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

187

Amino Acids

21.06

Weight (kDa)

10.02

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032892)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG142200 Rh1CG134200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	110
AccII	CGCG	1 cut(s)	190
AciI	CCGC	3 cut(s)	180, 188, 190
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	100, 526
AfiI	CCNNNNNNNGG	3 cut(s)	194, 290, 506
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	6 cut(s)	25, 70, 81, 314, 323, 473
AluBI	AGCT	2 cut(s)	21, 452
AluI	AGCT	2 cut(s)	21, 452
Alw21I	GWGCWC	1 cut(s)	108
AoxI	GGCC	3 cut(s)	93, 181, 292
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	93, 292
AsuHPI	GGTGA	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	273
BceAI	ACGGC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	18, 227
BfoI	RGCGCY	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	427
BglII	AGATCT	2 cut(s)	8, 479
BisI	GCNGC	3 cut(s)	181, 188, 434
BlsI	GCNGC	3 cut(s)	182, 189, 435
BmgT120I	GGNCC	2 cut(s)	93, 292
BmiI	GGNNCC	1 cut(s)	112
BmsI	GCATC	3 cut(s)	369, 393, 420
BpmI	CTGGAG	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	188, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 290, 506
BseDI	CCNNGG	2 cut(s)	188, 500
BseGI	GGATG	4 cut(s)	140, 216, 435, 469
BseLI	CCNNNNNNNGG	3 cut(s)	194, 290, 506
BseMII	CTCAG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	3 cut(s)	95, 183, 294
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	194, 290, 506
BsnI	GGCC	3 cut(s)	95, 183, 294
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	3, 8, 335, 479
BspACI	CCGC	3 cut(s)	180, 188, 190
BspANI	GGCC	3 cut(s)	95, 183, 294
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	188, 500
BssMI	GATC	4 cut(s)	3, 8, 335, 479
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	103, 119
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	185, 296, 491
BstDEI	CTNAG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	4 cut(s)	140, 216, 435, 469
BstFNI	CGCG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	4 cut(s)	6, 11, 338, 482
BstMBI	GATC	4 cut(s)	3, 8, 335, 479
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	445
BstX2I	RGATCY	2 cut(s)	8, 479
BstYI	RGATCY	2 cut(s)	8, 479
BsuRI	GGCC	3 cut(s)	95, 183, 294
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	4 cut(s)	140, 216, 435, 469
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	3 cut(s)	185, 296, 491
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	93, 292
Cfr42I	CCGCGG	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	99, 525
CviAII	CATG	2 cut(s)	328, 419
CviQI	GTAC	2 cut(s)	99, 525
DdeI	CTNAG	1 cut(s)	269
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	4 cut(s)	5, 10, 337, 481
DpnII	GATC	4 cut(s)	3, 8, 335, 479
EaeI	YGGCCR	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	500
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	2 cut(s)	331, 422
FaiI	YATR	6 cut(s)	39, 329, 342, 365, 420, 546
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	2 cut(s)	327, 418
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	181, 188, 434
FokI	GGATG	4 cut(s)	127, 223, 442, 476
Fsp4HI	GCNGC	3 cut(s)	181, 188, 434
FspBI	CTAG	2 cut(s)	18, 227
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	3 cut(s)	181, 188, 434
GsuI	CTGGAG	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	95, 183, 294
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	331, 422
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	556
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	5 cut(s)	8, 60, 197, 402, 515
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	2 cut(s)	176, 179
HpyAV	CCTTC	4 cut(s)	171, 192, 228, 467
HpyCH4III	ACNGT	2 cut(s)	103, 119
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	3 cut(s)	418, 433, 493
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	496
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	331, 422
HspAI	GCGC	1 cut(s)	111
KasI	GGCGCC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	191
Kzo9I	GATC	4 cut(s)	3, 8, 335, 479
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	3 cut(s)	369, 393, 420
MaeI	CTAG	2 cut(s)	18, 227
MaeII	ACGT	1 cut(s)	496
MalI	GATC	4 cut(s)	5, 10, 337, 481
MboI	GATC	4 cut(s)	3, 8, 335, 479
MboII	GAAGA	5 cut(s)	3, 6, 243, 326, 489
MfeI	CAATTG	3 cut(s)	25, 81, 550
MflI	RGATCY	2 cut(s)	8, 479
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	5 cut(s)	25, 43, 81, 203, 550
Mly113I	GGCGCC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	154, 283
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	190
MspCI	CTTAAG	1 cut(s)	518
MunI	CAATTG	3 cut(s)	25, 81, 550
MvnI	CGCG	1 cut(s)	190
NarI	GGCGCC	1 cut(s)	111
NdeII	GATC	4 cut(s)	3, 8, 335, 479
NlaIII	CATG	2 cut(s)	331, 422
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	87
PaqCI	CACCTGC	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	182, 189, 435
PluTI	GGCGCC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	2 cut(s)	93, 292
PsuI	RGATCY	2 cut(s)	8, 479
RsaI	GTAC	2 cut(s)	100, 526
RsaNI	GTAC	2 cut(s)	99, 525
RseI	CAYNNNNRTG	1 cut(s)	145
SacII	CCGCGG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	3 cut(s)	181, 188, 434
Sau3AI	GATC	4 cut(s)	3, 8, 335, 479
Sau96I	GGNCC	2 cut(s)	93, 292
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	6 cut(s)	23, 239, 441, 454, 499, 530
SfaNI	GCATC	3 cut(s)	369, 393, 420
SfoI	GGCGCC	1 cut(s)	112
Sfr303I	CCGCGG	1 cut(s)	191
SgrBI	CCGCGG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	5 cut(s)	25, 43, 81, 203, 550
SsiI	CCGC	3 cut(s)	180, 188, 190
SspDI	GGCGCC	1 cut(s)	110
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	2 cut(s)	18, 227
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	2 cut(s)	103, 119
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	334
TasI	AATT	5 cut(s)	25, 43, 81, 203, 550
TatI	WGTACW	1 cut(s)	98
TauI	GCSGC	2 cut(s)	183, 190
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TseI	GCWGC	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	26, 37, 227
Vha464I	CTTAAG	1 cut(s)	518
XapI	RAATTY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	2 cut(s)	18, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.