Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0032892

Physical Location & Seq

Genomic Coordinates Reverse (-)

29405435 .. 29410478

Gene Structure 5044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG134200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTCAATCCAAGTTCAATTGTGATTATACAGAGGGCCTGTACTGTGCTCGGCGCCTACGGTGGTGGCAATAGCACTTTCTCATCCTCGTGGGAAGCCCTGCCTTCTGTTGCCGTCGTCGGCGGCCAGCCGCGGTTCGGAAGGAAATTCAGGATGAAACCGATAAGACTAGCAGGAAGGTCAAAAATGATATCTTCTGTTCCTATCCATCTCAGTATCTACTCGCCCAACGAGGGCCAGCCTGAAAGTATTGTTGAAGATATTGAAAACATGGTTCGATCTTATGTTGAGAAGCCTAATAGCATCATACTATCAATATCTCCAGCCAACCAATCGCTACATCTGATGCTACCGAACTTGCATGGGAAGTGGATGCAGCAGGTATACCCTGTTTACTTTGTTAGAGTAAACCGTTTCCCTTGCTTGTGGACTGTCCTACAGTTAATTTGTCTCATGCACTTATATTATAACTTGCACACAGGTGAACGAACGTTTAGGGTGATGACAAAGCTTGATTTGATGGGCAAAGGAGCTAATATTGTGGATGTTATTGAAGGAAGATCTTATCGCCTGCAACGTCCTTGGGTTGGAATTAATGGGTTCAGACTTAAGAGTACCTTGCTAAACTTCTGTCATAGCAATTGGAGTCTGCCTATAGCCGTTGACGCTGGGGCGACCCGGGGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

229

Amino Acids

25.75

Weight (kDa)

9.92

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032892)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG142200 Rh1CG134200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	133
AciI	CCGC	3 cut(s)	123, 131, 133
AclI	AACGTT	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	2 cut(s)	43, 616
AfiI	CCNNNNNNNGG	3 cut(s)	137, 233, 587
AflII	CTTAAG	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	7, 18, 257, 266, 554
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	511, 533
AluI	AGCT	2 cut(s)	511, 533
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	678
AoxI	GGCC	3 cut(s)	36, 124, 235
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	1 cut(s)	146
AseI	ATTAAT	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	36, 235
AsuC2I	CCSGG	2 cut(s)	679, 680
AsuHPI	GGTGA	2 cut(s)	494, 511
AvaI	CYCGRG	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	2 cut(s)	216, 514
BceAI	ACGGC	2 cut(s)	98, 644
BcnI	CCSGG	2 cut(s)	679, 680
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	437, 654
BfoI	RGCGCY	1 cut(s)	57
BfrI	CTTAAG	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	3 cut(s)	124, 131, 377
BlsI	GCNGC	3 cut(s)	125, 132, 378
Bme1390I	CCNGG	2 cut(s)	679, 680
BmeT110I	CYCGRG	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	36, 235
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	679, 680
BmsI	GCATC	3 cut(s)	312, 336, 363
BpmI	CTGGAG	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	679, 680
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	4 cut(s)	131, 581, 678, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 233, 587
BseDI	CCNNGG	4 cut(s)	131, 581, 678, 679
BseGI	GGATG	4 cut(s)	83, 159, 378, 550
BseLI	CCNNNNNNNGG	3 cut(s)	137, 233, 587
BseMII	CTCAG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	38, 126, 237
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	678
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	3 cut(s)	137, 233, 587
BsmAI	GTCTC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	38, 126, 237
BsoBI	CYCGRG	1 cut(s)	678
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	278, 560
BspACI	CCGC	3 cut(s)	123, 131, 133
BspANI	GGCC	3 cut(s)	38, 126, 237
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	53
BspTI	CTTAAG	1 cut(s)	608
BssECI	CCNNGG	4 cut(s)	131, 581, 678, 679
BssMI	GATC	2 cut(s)	278, 560
BssNAI	GTATAC	1 cut(s)	385
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	581
Bst1107I	GTATAC	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	88
Bst4CI	ACNGT	5 cut(s)	46, 62, 413, 433, 441
BstACI	GRCGYC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	608
BstC8I	GCNNGC	3 cut(s)	128, 239, 572
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	4 cut(s)	83, 159, 378, 550
BstFNI	CGCG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	281, 563
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	278, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	677, 678
BstSFI	CTRYAG	2 cut(s)	437, 654
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
BstZ17I	GTATAC	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	38, 126, 237
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	4 cut(s)	83, 159, 378, 550
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	3 cut(s)	128, 239, 572
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	36, 235
Cfr42I	CCGCGG	1 cut(s)	134
Cfr9I	CCCGGG	1 cut(s)	678
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	2 cut(s)	42, 615
CviAII	CATG	3 cut(s)	271, 362, 454
CviQI	GTAC	2 cut(s)	42, 615
DdeI	CTNAG	1 cut(s)	212
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	2 cut(s)	280, 562
DpnII	GATC	2 cut(s)	278, 560
EaeI	YGGCCR	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	581
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	3 cut(s)	274, 365, 457
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FatI	CATG	3 cut(s)	270, 361, 453
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	124, 131, 377
FokI	GGATG	4 cut(s)	70, 166, 385, 557
Fsp4HI	GCNGC	3 cut(s)	124, 131, 377
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	124, 131, 377
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	38, 126, 237
HapII	CCGG	1 cut(s)	679
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	274, 365, 457
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	646
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	2 cut(s)	494, 511
Hpy166II	GTNNAC	6 cut(s)	385, 394, 409, 429, 485, 664
Hpy188I	TCNGA	3 cut(s)	140, 345, 605
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	6 cut(s)	385, 394, 409, 429, 485, 664
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	4 cut(s)	114, 135, 171, 548
HpyCH4III	ACNGT	5 cut(s)	46, 62, 413, 433, 441
HpyCH4IV	ACGT	2 cut(s)	491, 577
HpyCH4V	TGCA	5 cut(s)	361, 376, 457, 475, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	2 cut(s)	491, 577
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	274, 365, 457
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	278, 560
LmnI	GCTCC	1 cut(s)	530
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	3 cut(s)	312, 336, 363
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	491, 577
MalI	GATC	2 cut(s)	280, 562
MboI	GATC	2 cut(s)	278, 560
MboII	GAAGA	3 cut(s)	186, 269, 570
MfeI	CAATTG	2 cut(s)	18, 640
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	5 cut(s)	18, 146, 444, 591, 640
Mly113I	GGCGCC	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	3 cut(s)	27, 97, 226
MseI	TTAA	3 cut(s)	443, 594, 609
MslI	CAYNNNNRTG	2 cut(s)	88, 480
MspA1I	CMGCKG	1 cut(s)	133
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	679, 680
MunI	CAATTG	2 cut(s)	18, 640
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	665
NarI	GGCGCC	1 cut(s)	54
NciI	CCSGG	2 cut(s)	679, 680
NdeII	GATC	2 cut(s)	278, 560
NlaIII	CATG	3 cut(s)	274, 365, 457
NlaIV	GGNNCC	1 cut(s)	55
NmeAIII	GCCGAG	1 cut(s)	30
OliI	CACNNNNGTG	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	574
PkrI	GCNGC	3 cut(s)	125, 132, 378
PleI	GAGTC	1 cut(s)	654
PluTI	GGCGCC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	654
PshBI	ATTAAT	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	468
Psp1406I	AACGTT	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	668
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	36, 235
PsuI	RGATCY	1 cut(s)	560
RsaI	GTAC	2 cut(s)	43, 616
RsaNI	GTAC	2 cut(s)	42, 615
RseI	CAYNNNNRTG	2 cut(s)	88, 480
SacII	CCGCGG	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	443, 594, 609
SatI	GCNGC	3 cut(s)	124, 131, 377
Sau3AI	GATC	2 cut(s)	278, 560
Sau96I	GGNCC	2 cut(s)	36, 235
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	2 cut(s)	679, 680
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	8 cut(s)	182, 384, 484, 494, 513, 535, 580, 620
SfaNI	GCATC	3 cut(s)	312, 336, 363
SfcI	CTRYAG	2 cut(s)	437, 654
SfoI	GGCGCC	1 cut(s)	55
Sfr303I	CCGCGG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	134
SmaI	CCCGGG	1 cut(s)	680
SmiMI	CAYNNNNRTG	2 cut(s)	88, 480
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	5 cut(s)	18, 146, 444, 591, 640
SsiI	CCGC	3 cut(s)	123, 131, 133
SspDI	GGCGCC	1 cut(s)	53
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	677, 678
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	5 cut(s)	46, 62, 413, 433, 441
TaiI	ACGT	2 cut(s)	494, 580
TaqI	TCGA	1 cut(s)	277
TasI	AATT	5 cut(s)	18, 146, 444, 591, 640
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	2 cut(s)	126, 133
Tru1I	TTAA	3 cut(s)	443, 594, 609
Tru9I	TTAA	3 cut(s)	443, 594, 609
TseI	GCWGC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	170
TspMI	CCCGGG	1 cut(s)	678
Vha464I	CTTAAG	1 cut(s)	608
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	1 cut(s)	146
XmaI	CCCGGG	1 cut(s)	678
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.