Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0026181

Physical Location & Seq

Genomic Coordinates Reverse (-)

30100287 .. 30131604

Gene Structure 31318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG158900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTGAGCTGTCAGCAGATGATTCAAAGAAGAGAAAGAATGAAGCCTCAAGCACCTCCACAGCCGGAGATCCGCCGCAAACACTGCAGGCCAGGTTGAAGAAGGCCAAGTCTGCCCTGGTCAACTCGATCAGTTGCCGCAAACCGAGCTTCTCCGACAACGGCGAGCCGGCCAACTCGTTCGTCAACACCGAGGAGTGCGTGTCCCCCGAGGTCGTCTGCGGAGAGGGTCACGAGTTCGCCATTGACTGGTGGGCCCTAGGGATTCTCACCTACAAGTGCCTCTACGGGACTACGTCGCTTAAGGGGAAGAGCAGGAAAGAGACGTTCCGGAAAGTGCTGACGAAGACGCCAGAGTTGGAAGATGAGGTTGTGGGCCTGAGAATCGGTAATAAAATATTTTCTTCTCAAAAAGTAATAAAATATTTGGAGCTGAATAGGACAATGAAGATCTTTATTTATAAATATGGTAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

159

Amino Acids

17.72

Weight (kDa)

9.23

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 119	3.1e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0026181)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG158900 Rh2CG641600 Rh2DG692300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	4 cut(s)	74, 77, 139, 222
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	249
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	27, 100
AjnI	CCWGG	2 cut(s)	92, 117
AluBI	AGCT	3 cut(s)	10, 150, 433
AluI	AGCT	3 cut(s)	10, 150, 433
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	5 cut(s)	90, 105, 171, 255, 376
ApaI	GGGCCC	1 cut(s)	259
AspA2I	CCTAGG	1 cut(s)	259
AspS9I	GGNCC	3 cut(s)	255, 256, 376
AsuHPI	GGTGA	2 cut(s)	17, 262
AvaI	CYCGRG	1 cut(s)	209
AvrII	CCTAGG	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	259
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	94, 119
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	302
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	2 cut(s)	77, 139
BlnI	CCTAGG	1 cut(s)	259
BlsI	GCNGC	2 cut(s)	78, 140
Bme1390I	CCNGG	2 cut(s)	94, 119
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	3 cut(s)	255, 256, 376
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	2 cut(s)	94, 119
BpiI	GAAGAC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	4 cut(s)	117, 192, 210, 259
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	254
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	94, 119
BseDI	CCNNGG	4 cut(s)	117, 192, 210, 259
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	259
BshFI	GGCC	5 cut(s)	92, 107, 173, 257, 378
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	3 cut(s)	66, 170, 331
BslFI	GGGAC	2 cut(s)	190, 304
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	190, 304
BsnI	GGCC	5 cut(s)	92, 107, 173, 257, 378
BsoBI	CYCGRG	1 cut(s)	209
Bsp120I	GGGCCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	70, 129, 450
BspACI	CCGC	4 cut(s)	74, 77, 139, 222
BspANI	GGCC	5 cut(s)	92, 107, 173, 257, 378
BspCNI	CTCAG	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	4 cut(s)	117, 192, 210, 259
BssMI	GATC	3 cut(s)	70, 129, 450
BssNI	GRCGYC	1 cut(s)	350
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	94, 119
Bst6I	CTCTTC	2 cut(s)	26, 305
BstACI	GRCGYC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstC8I	GCNNGC	3 cut(s)	90, 167, 171
BstDEI	CTNAG	1 cut(s)	380
BstKTI	GATC	3 cut(s)	73, 132, 453
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	70, 129, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 113, 147
BstNI	CCWGG	2 cut(s)	94, 119
BstSCI	CCNGG	2 cut(s)	92, 117
BstSFI	CTRYAG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	70, 450
BstYI	RGATCY	2 cut(s)	70, 450
BsuRI	GGCC	5 cut(s)	92, 107, 173, 257, 378
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	90, 167, 171
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	255, 256, 376
CseI	GACGC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	3 cut(s)	72, 131, 452
DpnII	GATC	3 cut(s)	70, 129, 450
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	26, 305
EarI	CTCTTC	2 cut(s)	26, 305
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	92, 117
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	317
FaiI	YATR	3 cut(s)	462, 468, 478
FaqI	GGGAC	2 cut(s)	190, 304
Fnu4HI	GCNGC	2 cut(s)	77, 139
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	77, 139
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	77, 139
HaeIII	GGCC	5 cut(s)	92, 107, 173, 257, 378
HapII	CCGG	3 cut(s)	66, 170, 331
HgaI	GACGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	350
HincII	GTYRAC	2 cut(s)	124, 187
HindII	GTYRAC	2 cut(s)	124, 187
HinfI	GANTC	3 cut(s)	23, 265, 384
HpaII	CCGG	3 cut(s)	66, 170, 331
HphI	GGTGA	2 cut(s)	17, 262
Hpy166II	GTNNAC	2 cut(s)	124, 187
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	233, 331
Hpy8I	GTNNAC	2 cut(s)	124, 187
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	296, 326
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 113, 147
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	2 cut(s)	296, 326
Hsp92I	GRCGYC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	330
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	70, 129, 450
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	296, 326
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	72, 131, 452
MboI	GATC	3 cut(s)	70, 129, 450
MboII	GAAGA	7 cut(s)	43, 112, 322, 358, 374, 396, 460
MflI	RGATCY	2 cut(s)	70, 450
MhlI	GDGCHC	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	180, 339
MnlI	CCTC	7 cut(s)	58, 67, 187, 205, 220, 293, 361
MroI	TCCGGA	1 cut(s)	330
MroNI	GCCGGC	1 cut(s)	169
MseI	TTAA	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	3 cut(s)	66, 170, 331
MspR9I	CCNGG	2 cut(s)	94, 119
MvaI	CCWGG	2 cut(s)	94, 119
MwoI	GCNNNNNNNGC	3 cut(s)	85, 113, 147
NaeI	GCCGGC	1 cut(s)	171
NdeII	GATC	3 cut(s)	70, 129, 450
NgoMIV	GCCGGC	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	23, 265, 384
PflFI	GACNNNGTC	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	78, 140
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	92, 117
PspGI	CCWGG	2 cut(s)	92, 117
PspN4I	GGNNCC	1 cut(s)	257
PspOMI	GGGCCC	1 cut(s)	255
PspPI	GGNCC	3 cut(s)	255, 256, 376
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	2 cut(s)	70, 450
PsyI	GACNNNGTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	2 cut(s)	77, 139
Sau3AI	GATC	3 cut(s)	70, 129, 450
Sau96I	GGNCC	3 cut(s)	255, 256, 376
ScrFI	CCNGG	2 cut(s)	94, 119
SduI	GDGCHC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	49, 302
SmoI	CTYRAG	2 cut(s)	49, 302
SsiI	CCGC	4 cut(s)	74, 77, 139, 222
SspI	AATATT	2 cut(s)	399, 425
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	92, 117
StyI	CCWWGG	1 cut(s)	259
TaiI	ACGT	2 cut(s)	299, 329
TaqI	TCGA	1 cut(s)	128
TauI	GCSGC	2 cut(s)	79, 141
TfiI	GAWTC	3 cut(s)	23, 265, 384
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	57, 461
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	259
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.