Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0026181

Physical Location & Seq

Genomic Coordinates Reverse (-)

81147747 .. 81151034

Gene Structure 3288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG641600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGACTGGTGGGCCCTAGGGATTCTCACCCACGAGTGCCTCTATGGGACGACGCCGTTTAAGGGGAATAGCAGGAAGGAGACGTTCCGGAACATGCTAACGAAGACGCCGGAGTTGGAAGATGAGGTTGTGGGCCGGAGAGTCGGGTCAAAATTTGGAATGTTGCTTGGTTGGAATGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

61

Amino Acids

6.97

Weight (kDa)

7.92

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026181)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG158900 Rh2CG641600 Rh2DG692300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	53, 107
AfiI	CCNNNNNNNGG	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	87
AoxI	GGCC	2 cut(s)	12, 133
ApaI	GGGCCC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	152
AspA2I	CCTAGG	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	12, 13, 133
AsuHPI	GGTGA	1 cut(s)	19
AvrII	CCTAGG	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	17
BlnI	CCTAGG	1 cut(s)	16
BmgT120I	GGNCC	3 cut(s)	12, 13, 133
BmiI	GGNNCC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	53, 107
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	14, 135
BsiSI	CCGG	3 cut(s)	88, 110, 136
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	14, 135
Bsp120I	GGGCCC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	87
BspANI	GGCC	2 cut(s)	14, 135
BspEI	TCCGGA	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	16
BssNI	GRCGYC	2 cut(s)	53, 107
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	32
BstACI	GRCGYC	2 cut(s)	53, 107
BstMAI	GTCTC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	14, 135
Cfr13I	GGNCC	3 cut(s)	12, 13, 133
CseI	GACGC	2 cut(s)	61, 115
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	2 cut(s)	14, 135
CviKI_1	RGCY	2 cut(s)	14, 135
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	1 cut(s)	97
FaiI	YATR	2 cut(s)	45, 95
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	14, 135
HapII	CCGG	3 cut(s)	88, 110, 136
HgaI	GACGC	2 cut(s)	61, 115
Hin1I	GRCGYC	2 cut(s)	53, 107
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	2 cut(s)	22, 141
HpaII	CCGG	3 cut(s)	88, 110, 136
HphI	GGTGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	2 cut(s)	53, 107
Hsp92II	CATG	1 cut(s)	97
Kpn2I	TCCGGA	1 cut(s)	87
LpnPI	CCDG	4 cut(s)	58, 101, 123, 149
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	83
MboII	GAAGA	2 cut(s)	115, 131
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	2 cut(s)	96, 152
MnlI	CCTC	2 cut(s)	50, 118
MroI	TCCGGA	1 cut(s)	87
MseI	TTAA	1 cut(s)	60
MspI	CCGG	3 cut(s)	88, 110, 136
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	14
PspOMI	GGGCCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	12, 13, 133
SaqAI	TTAA	1 cut(s)	60
Sau96I	GGNCC	3 cut(s)	12, 13, 133
SchI	GAGTC	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	2 cut(s)	86, 129
Sse9I	AATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	86
TasI	AATT	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	97
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.