Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0026184

Physical Location & Seq

Genomic Coordinates Forward (+)

33463208 .. 33469652

Gene Structure 6445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG174600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTGTACGTTGAATGCTGGAAAGCTGCAATTCACCAAGTATCCGGTCCCTTTGATCGTCAATTGCACCAAGGATGATGGAAATGACATTCTCAACATCGGTGTAGGTCATGTTCGCACTGTTTCATACACTCCTCATAATCTAGGTACTCCAAATGAGGATATGTGGCCTGGAATGAGTAATATGCCTAATTTTAAATCTTCCTTTCCTAAGCAGCCTTCTAAGGACTTGGCAACTCTAGTTCCAAATCTTAAATCAGTTGGTGTTGATCTTCCTTTTAAAGATATGCATGCAGTGGTGGCATTTTCTAAGTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

106

Amino Acids

11.61

Weight (kDa)

8.49

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026184)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG174600 Rh1CG162400 Rh1CG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	7, 148
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	25, 214
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	12, 226
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	143, 239
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	26, 215
BlsI	GCNGC	2 cut(s)	27, 216
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	12, 226
BshFI	GGCC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	54, 268
BspANI	GGCC	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	54, 268
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	210, 222, 309
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	57, 271
BstMBI	GATC	2 cut(s)	54, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	12, 226
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	117, 300
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	6, 147
CviAII	CATG	2 cut(s)	110, 290
CviJI	RGCY	3 cut(s)	25, 169, 217
CviKI_1	RGCY	3 cut(s)	25, 169, 217
CviQI	GTAC	2 cut(s)	6, 147
DdeI	CTNAG	3 cut(s)	210, 222, 309
DpnI	GATC	2 cut(s)	56, 270
DpnII	GATC	2 cut(s)	54, 268
DraI	TTTAAA	2 cut(s)	196, 280
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	113, 293
FaiI	YATR	7 cut(s)	111, 127, 138, 164, 185, 287, 291
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	109, 289
Fnu4HI	GCNGC	2 cut(s)	26, 215
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	26, 215
FspBI	CTAG	2 cut(s)	143, 239
GluI	GCNGC	2 cut(s)	26, 215
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	113, 293
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	28, 66, 289, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	3 cut(s)	210, 222, 309
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	113, 293
Kzo9I	GATC	2 cut(s)	54, 268
LpnPI	CCDG	4 cut(s)	3, 57, 156, 183
Lsp1109I	GCAGC	2 cut(s)	12, 226
MaeI	CTAG	2 cut(s)	143, 239
MaeII	ACGT	1 cut(s)	8
MalI	GATC	2 cut(s)	56, 270
MboI	GATC	2 cut(s)	54, 268
MboII	GAAGA	2 cut(s)	192, 263
MfeI	CAATTG	1 cut(s)	61
MluCI	AATT	3 cut(s)	29, 61, 190
MnlI	CCTC	2 cut(s)	144, 151
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	3 cut(s)	195, 252, 279
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	54, 268
NlaIII	CATG	2 cut(s)	113, 293
NlaIV	GGNNCC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	27, 216
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	46
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
RsaI	GTAC	2 cut(s)	7, 148
RsaNI	GTAC	2 cut(s)	6, 147
SaqAI	TTAA	3 cut(s)	195, 252, 279
SatI	GCNGC	2 cut(s)	26, 215
Sau3AI	GATC	2 cut(s)	54, 268
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	4 cut(s)	11, 27, 109, 148
SinI	GGWCC	1 cut(s)	46
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	3 cut(s)	29, 61, 190
SspMI	CTAG	2 cut(s)	143, 239
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	11
TasI	AATT	3 cut(s)	29, 61, 190
Tru1I	TTAA	3 cut(s)	195, 252, 279
Tru9I	TTAA	3 cut(s)	195, 252, 279
TscAI	CASTG	2 cut(s)	124, 300
TseI	GCWGC	2 cut(s)	25, 214
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	2 cut(s)	124, 300
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	2 cut(s)	143, 239
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.