Rh1CG162400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
35961096 .. 35961388
293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG162400.1

Sequence Viewer

Length: 171 bp
ATGTGCACAAAGGATGATGGAAAGGGCATTCTCAACATCGGTGCAGGTCACGTTCTCACTGTTTCATGCACTCCTCATGTACTCCTCCGCCATCATGCACTGGCCATTGGTAACATAATCCTCAAACAATATCAGGTTGAAGAAGACTGGAGAATCTTTATCCGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.35

Weight (kDa)

8.8

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0026184)

Species Orthologous Gene IDs
rosa_samantha Rh1AG174600 Rh1CG162400 Rh1CG162500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AciI CCGC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 102
AfaI GTAC 1 cut(s) 81
AgsI TTSAA 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 8
Alw44I GTGCAC 1 cut(s) 4
AoxI GGCC 1 cut(s) 102
ApaLI GTGCAC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 2 cut(s) 11, 99
BfuAI ACCTGC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 105, 152
BseGI GGATG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 105, 152
BseRI GAGGAG 2 cut(s) 63, 74
BseSI GKGCMC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 163
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 35
BsrI ACTGG 2 cut(s) 105, 152
Bst4CI ACNGT 1 cut(s) 61
BstF5I GGATG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 57, 98
BveI ACCTGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 80
CviAII CATG 3 cut(s) 66, 77, 95
CviJI RGCY 1 cut(s) 104
CviKI_1 RGCY 1 cut(s) 104
CviQI GTAC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 102
EciI GGCGGA 1 cut(s) 77
FaeI CATG 3 cut(s) 69, 80, 98
FaiI YATR 4 cut(s) 67, 78, 96, 116
FatI CATG 3 cut(s) 65, 76, 94
FokI GGATG 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 163
Hin1II CATG 3 cut(s) 69, 80, 98
HinfI GANTC 1 cut(s) 153
HpaII CCGG 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 6, 44, 69, 98
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 3 cut(s) 69, 80, 98
LpnPI CCDG 4 cut(s) 30, 86, 119, 133
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 47, 110
MboII GAAGA 2 cut(s) 152, 155
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 104
MnlI CCTC 3 cut(s) 84, 95, 131
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 27
NlaIII CATG 3 cut(s) 69, 80, 98
NmuCI GTSAC 1 cut(s) 47
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 153
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 49, 54, 138
SgeI CNNG 8 cut(s) 57, 62, 78, 89, 107, 113, 146, 160
SsiI CCGC 1 cut(s) 88
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 54
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 1 cut(s) 153
TscAI CASTG 2 cut(s) 64, 105
TseFI GTSAC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 2 cut(s) 64, 105
VneI GTGCAC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.