Rh1AG265500
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0026194
Physical Location & Seq
Forward (+)
49168367 .. 49169406
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG265500.1

Sequence Viewer

Length: 435 bp
ATGGAACCCTCAGAGAACATTTGGATTGTAAGTTGTATTACTGGGTTTTTCGCGCTTTTGGTTCCCGAATTTTGCCTTAAGTGTCTGAATGTCATAGAAATGCATAATGCAGGTCTGCGCGGCAACATTCTTGACCTTGGGGCGCGGCTTGACATTGCAATCGATGTCGCTCATGGTGCTATGAAGAAGTTTAGTGATGGAGATGCTCTTTTAATTTTGGATCCCAGGCTGGAAAAGAGTGCAGCCAATAATTTAGCCATTGAAAAGATTCTTGAACTATCCTTGCAATGCTTGGCTCAACGTAGACAGCACCGGCCTAGCATGAAGAGGTGCGCGGAGATCCTCTGGAGCATCCGAAAGGACTATAAAGAGATATCAGTTCCAGACTTTCGTTCATCTTCCACCCGTTCGCAAAGGAGCACTTTAACAGAGTAA

Protein Analysis

144

Amino Acids

16.23

Weight (kDa)

7.65

Isoelectric Point (pI)

71.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0026194)

Species Orthologous Gene IDs
rosa_samantha Rh1AG265500 Rh1BG233000 Rh1DG260500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 304
AccII CGCG 4 cut(s) 53, 120, 145, 335
AciI CCGC 3 cut(s) 120, 145, 335
AclWI GGATC 3 cut(s) 215, 228, 334
AcsI RAATTY 1 cut(s) 68
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 2 cut(s) 263, 275
AjnI CCWGG 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 422
AlwI GGATC 3 cut(s) 215, 228, 334
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 4 cut(s) 55, 120, 145, 335
BamHI GGATCC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 254
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 226
BfaI CTAG 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 3 cut(s) 121, 146, 243
BlsI GCNGC 3 cut(s) 122, 147, 244
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 3 cut(s) 6, 63, 222
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 193, 360
BmuI ACTGGG 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 367
Bsa29I ATCGAT 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 136, 224
Bse118I RCCGGY 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 2 cut(s) 153, 293
BseBI CCWGG 1 cut(s) 226
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 136, 224
BseGI GGATG 1 cut(s) 351
BseMI GCAATG 2 cut(s) 153, 293
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 4 cut(s) 53, 120, 145, 335
BshFI GGCC 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 422
BsiSI CCGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 2 cut(s) 220, 339
BspACI CCGC 3 cut(s) 120, 145, 335
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 23
BspDI ATCGAT 1 cut(s) 162
BspFNI CGCG 4 cut(s) 53, 120, 145, 335
BspLI GGNNCC 3 cut(s) 6, 63, 222
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 3 cut(s) 215, 228, 334
BspTI CTTAAG 1 cut(s) 77
BsrDI GCAATG 2 cut(s) 153, 293
BsrFI RCCGGY 1 cut(s) 312
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 136, 224
BssMI GATC 2 cut(s) 220, 339
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 320
BstAFI CTTAAG 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 351
BstFNI CGCG 4 cut(s) 53, 120, 145, 335
BstHHI GCGC 4 cut(s) 55, 120, 145, 335
BstKTI GATC 2 cut(s) 223, 342
BstMBI GATC 2 cut(s) 220, 339
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstUI CGCG 4 cut(s) 53, 120, 145, 335
BstV1I GCAGC 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 220, 339
BstYI RGATCY 2 cut(s) 220, 339
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 1 cut(s) 316
BsuTUI ATCGAT 1 cut(s) 162
BtsCI GGATG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 101
CfoI GCGC 4 cut(s) 55, 120, 145, 335
Cfr10I RCCGGY 1 cut(s) 312
ClaI ATCGAT 1 cut(s) 162
CviAII CATG 2 cut(s) 173, 322
CviJI RGCY 6 cut(s) 148, 229, 245, 257, 296, 316
CviKI_1 RGCY 6 cut(s) 148, 229, 245, 257, 296, 316
DdeI CTNAG 1 cut(s) 10
DpnI GATC 2 cut(s) 222, 341
DpnII GATC 2 cut(s) 220, 339
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 136
Eco32I GATATC 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 224
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 176, 325
FaiI YATR 6 cut(s) 95, 105, 174, 182, 323, 366
FalI AAGNNNNNCTT 1 cut(s) 406
FatI CATG 2 cut(s) 172, 321
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 121, 146, 243
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 3 cut(s) 121, 146, 243
FspBI CTAG 1 cut(s) 318
GlaI GCGC 4 cut(s) 54, 119, 144, 334
GluI GCNGC 3 cut(s) 121, 146, 243
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 313
HhaI GCGC 4 cut(s) 55, 120, 145, 335
Hin1II CATG 2 cut(s) 176, 325
Hin6I GCGC 4 cut(s) 53, 118, 143, 333
HinP1I GCGC 4 cut(s) 53, 118, 143, 333
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 3 cut(s) 13, 87, 356
Hpy188III TCNNGA 5 cut(s) 65, 131, 272, 346, 383
Hpy8I GTNNAC 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 5 cut(s) 103, 110, 158, 242, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 2 cut(s) 176, 325
HspAI GCGC 4 cut(s) 53, 118, 143, 333
Kzo9I GATC 2 cut(s) 220, 339
LmnI GCTCC 2 cut(s) 348, 417
LpnPI CCDG 8 cut(s) 27, 96, 211, 215, 238, 326, 331, 396
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 2 cut(s) 193, 360
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 301
MalI GATC 2 cut(s) 222, 341
MboI GATC 2 cut(s) 220, 339
MboII GAAGA 3 cut(s) 196, 337, 390
MflI RGATCY 2 cut(s) 220, 339
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 3 cut(s) 68, 213, 250
MnlI CCTC 3 cut(s) 19, 321, 353
Mph1103I ATGCAT 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 3 cut(s) 78, 212, 425
MslI CAYNNNNRTG 1 cut(s) 98
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 4 cut(s) 53, 120, 145, 335
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 2 cut(s) 220, 339
NlaIII CATG 2 cut(s) 176, 325
NlaIV GGNNCC 3 cut(s) 6, 63, 222
NsiI ATGCAT 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 3 cut(s) 122, 147, 244
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 6, 63, 222
PsuI RGATCY 2 cut(s) 220, 339
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 3 cut(s) 78, 212, 425
SatI GCNGC 3 cut(s) 121, 146, 243
Sau3AI GATC 2 cut(s) 220, 339
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 422
SetI ASST 4 cut(s) 115, 138, 304, 332
SfaNI GCATC 2 cut(s) 193, 360
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 3 cut(s) 68, 213, 250
SsiI CCGC 3 cut(s) 120, 145, 335
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 136
TaiI ACGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 68, 213, 250
TauI GCSGC 2 cut(s) 123, 148
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 3 cut(s) 78, 212, 425
Tru9I TTAA 3 cut(s) 78, 212, 425
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 197, 338, 384
Vha464I CTTAAG 1 cut(s) 77
XapI RAATTY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.