Rh1AG361600

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
59626894 .. 59630075
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG361600.1

Sequence Viewer

Length: 216 bp
ATGTTTAGGCAGAATGCAATTCAGCTCGCAGAGAAGGAGAAGAGCGAAAAGGAGCTTTTGAGCCAAATCATCGGAGAAGCTGAAGATTTCAAGGTTGAATTTTATCAGAAGAGGAAGATCACTTCTGAGAATAACAAAGCTACTAACAGGGAAAAAGAGAAGATGTTTGTTGCCAGTCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTAG

Protein Analysis

71

Amino Acids

8.47

Weight (kDa)

6.59

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024434)

Species Orthologous Gene IDs
malus_domestica MD17G1243100.v1.1
rosa_chinensis RchiOBHm_Chr1g0369891
rosa_samantha Rh1AG361600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 102
AgsI TTSAA 2 cut(s) 91, 98
AluBI AGCT 4 cut(s) 25, 55, 80, 140
AluI AGCT 4 cut(s) 25, 55, 80, 140
ApoI RAATTY 1 cut(s) 98
BbvCI CCTCAGC 1 cut(s) 195
BfaI CTAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 117, 186
BseNI ACTGG 1 cut(s) 174
BsmI GAATGC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 117
BspCNI CTCAG 2 cut(s) 118, 187
BspQI GCTCTTC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 174
BssMI GATC 1 cut(s) 117
Bst6I CTCTTC 2 cut(s) 35, 104
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 126, 195
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 27
CviAII CATG 1 cut(s) 191
CviJI RGCY 5 cut(s) 25, 55, 63, 80, 140
CviKI_1 RGCY 5 cut(s) 25, 55, 63, 80, 140
DdeI CTNAG 2 cut(s) 126, 195
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 35, 104
EarI CTCTTC 2 cut(s) 35, 104
Eco57I CTGAAG 1 cut(s) 102
FaeI CATG 1 cut(s) 194
FaiI YATR 1 cut(s) 192
FatI CATG 1 cut(s) 190
FblI GTMKAC 1 cut(s) 201
FspBI CTAG 1 cut(s) 214
Hin1II CATG 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 74, 108, 127
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 126, 195
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 1 cut(s) 117
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 2 cut(s) 133, 187
MaeI CTAG 1 cut(s) 214
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 5 cut(s) 52, 95, 121, 127, 172
MluCI AATT 2 cut(s) 18, 98
MnlI CCTC 2 cut(s) 105, 190
Mva1269I GAATGC 1 cut(s) 19
NdeII GATC 1 cut(s) 117
NlaIII CATG 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 35
PctI GAATGC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 117
SetI ASST 6 cut(s) 27, 57, 82, 96, 142, 201
SgeI CNNG 6 cut(s) 38, 103, 160, 186, 191, 203
Sse9I AATT 2 cut(s) 18, 98
SspMI CTAG 1 cut(s) 214
TasI AATT 2 cut(s) 18, 98
TspDTI ATGAA 1 cut(s) 179
XapI RAATTY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.