Rh1AG418100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0024654
Physical Location & Seq
Reverse (-)
64963820 .. 64964077
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG418100.1

Sequence Viewer

Length: 258 bp
ATGAAGGCTCAAAAGTGCTTAATCTCAACTCTCGTTGTTGCCATTGTCTTCCTAGCAATAATTCAAAGCTCCGATTGTCGACCTATTAGTACTGCTACTGCTCAAGCATCCAATACAGAGCAAAGGTCGAGTTACAGCAACAGGTATGCTCCAATGTTCCTAAGCGCCATGGAGTCCATCAGAAGGAACAAGATCAACCTGAGTCACGCAGTTTCGCGCCGAATGGTCCCCGCAGGACCCAATCCGCTTCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.36

Weight (kDa)

10.52

Isoelectric Point (pI)

63.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024654)

Species Orthologous Gene IDs
pyrus_communis pycom07g24490
rosa_roxburghii Rroxscaffold_4G00281500
rosa_samantha Rh1AG418100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 79
AccII CGCG 1 cut(s) 217
AciI CCGC 2 cut(s) 231, 245
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
AspLEI GCGC 2 cut(s) 167, 219
AspS9I GGNCC 2 cut(s) 226, 236
AvaII GGWCC 2 cut(s) 226, 236
BbsI GAAGAC 1 cut(s) 40
BccI CCATC 1 cut(s) 185
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 168
BmcAI AGTACT 1 cut(s) 91
Bme18I GGWCC 2 cut(s) 226, 236
BmgT120I GGNCC 2 cut(s) 226, 236
BmiI GGNNCC 2 cut(s) 228, 238
BmsI GCATC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 2 cut(s) 231, 245
BspCNI CTCAG 1 cut(s) 192
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 228, 238
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 161, 200
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 167, 219
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstUI CGCG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 1 cut(s) 107
CfoI GCGC 2 cut(s) 167, 219
Cfr13I GGNCC 2 cut(s) 226, 236
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 169
CviJI RGCY 2 cut(s) 8, 69
CviKI_1 RGCY 2 cut(s) 8, 69
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 161, 200
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 226, 236
EcoO109I RGGNCCY 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 147, 170
FaqI GGGAC 1 cut(s) 212
FatI CATG 1 cut(s) 168
FauI CCCGC 1 cut(s) 238
FblI GTMKAC 1 cut(s) 79
FokI GGATG 1 cut(s) 94
FspBI CTAG 1 cut(s) 53
GlaI GCGC 2 cut(s) 166, 218
HaeII RGCGCY 1 cut(s) 168
HhaI GCGC 2 cut(s) 167, 219
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 2 cut(s) 165, 217
HinP1I GCGC 2 cut(s) 165, 217
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HinfI GANTC 2 cut(s) 173, 202
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 73, 182
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 161, 200
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 2 cut(s) 165, 217
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 74, 154
LpnPI CCDG 3 cut(s) 127, 212, 219
LweI GCATC 1 cut(s) 116
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 131, 203
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 40
MfeI CAATTG 1 cut(s) 253
MluCI AATT 2 cut(s) 60, 253
MlyI GAGTC 2 cut(s) 182, 211
MseI TTAA 1 cut(s) 20
MunI CAATTG 1 cut(s) 253
MvnI CGCG 1 cut(s) 217
NcoI CCATGG 1 cut(s) 168
NdeII GATC 1 cut(s) 192
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 228, 238
NmuCI GTSAC 1 cut(s) 203
PleI GAGTC 2 cut(s) 181, 210
PpsI GAGTC 2 cut(s) 181, 210
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 228, 238
PspPI GGNCC 2 cut(s) 226, 236
PspPPI RGGWCCY 1 cut(s) 236
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SalI GTCGAC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 20
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 2 cut(s) 226, 236
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 2 cut(s) 182, 211
SetI ASST 5 cut(s) 71, 85, 128, 146, 201
SfaNI GCATC 1 cut(s) 116
SinI GGWCC 2 cut(s) 226, 236
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 2 cut(s) 60, 253
SsiI CCGC 2 cut(s) 231, 245
SspMI CTAG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 168
TaqI TCGA 2 cut(s) 79, 128
TasI AATT 2 cut(s) 60, 253
TatI WGTACW 1 cut(s) 89
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 226, 236
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 1 cut(s) 53
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.