Rh1AG445800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
66566363 .. 66566548
186 bp
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UTR
Exon/CDS
Intron
Rh1AG445800.1

Sequence Viewer

Length: 186 bp
ATGGATGCTGATATGGGCCGAGCACTTAGGCAGTCGAAGCAACTAAAACGGGAGTTTAATTTAGTCTTGGATCAAAAGGAGGAGTCAGTTTTTGATGGTCCAAAAACAATCTGCGGAGATTGTAAAAATGCACAAGGATTTGGAACAGAGAGACAAGATTTTGTCAGCAATGCTGAGGAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.9

Weight (kDa)

4.76

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025399)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026298
rosa_multiflora Rmu_sc0001733.1_g000009
rosa_samantha Rh1AG445800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 78
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 16, 98
AvaII GGWCC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 25
BbvCI CCTCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 16, 98
Bpu10I CCTNAGC 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 175
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 95
BshFI GGCC 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 175
BssMI GATC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 26, 174
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 16, 98
CviJI RGCY 1 cut(s) 18
CviKI_1 RGCY 1 cut(s) 18
DdeI CTNAG 2 cut(s) 26, 174
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 98
FaiI YATR 1 cut(s) 14
FokI GGATG 1 cut(s) 17
HaeIII GGCC 1 cut(s) 18
HinfI GANTC 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 26, 174
Kzo9I GATC 1 cut(s) 70
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 58
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 73, 169
MseI TTAA 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 44
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 16, 98
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 2 cut(s) 16, 98
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 25
SgeI CNNG 5 cut(s) 32, 62, 79, 146, 167
SinI GGWCC 1 cut(s) 98
Sse9I AATT 1 cut(s) 58
SsiI CCGC 1 cut(s) 114
TaqI TCGA 1 cut(s) 35
TasI AATT 1 cut(s) 58
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.