Rh1AG455300

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0024611
Physical Location & Seq
Reverse (-)
67390119 .. 67390552
434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG455300.1

Sequence Viewer

Length: 384 bp
ATGGTTGGTTGGAGGTCTCTTTTGATGTACCGATTGTGTTACTTGATAATGAGCTTCTGGATAAAATCTGGGATTCAAAGCGAGTCACAGTATATATCCACGCTGCATTGCTCTGCACACCAAGGCATTTGCACAGTTGAGTCTTCATTCTGCCTAGTAAAGGCCAAAGCTCTTGATCCACTTGTGAGAATGCTTGGGAAGGCAGATGTCGGAGCATGCGAAGCTTCTTTAGATGCACTGCTGACATTGATTGATGGCGGAAGACTAGAACAAGGAGGCAAGGTTCTAGACGAAGCAAAAGCCATCGGTCCGGTTGTTAAGCTATTGAGTTCACAGTCTGCCAGGTTGCAAAGAAAATCTCTCATGTCAAGTATGGAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

127

Amino Acids

13.85

Weight (kDa)

8.65

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024611)

Species Orthologous Gene IDs
pyrus_communis pycom01g23360
rosa_samantha Rh1AG455300 Rh1CG427200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 170
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 341
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 4 cut(s) 54, 170, 224, 322
AluI AGCT 4 cut(s) 54, 170, 224, 322
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 170
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 308
AvaII GGWCC 1 cut(s) 308
BbsI GAAGAC 2 cut(s) 135, 268
BbvI GCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 248, 311
BciT130I CCWGG 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 3 cut(s) 155, 266, 287
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 2 cut(s) 135, 268
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 3 cut(s) 90, 136, 336
BstC8I GCNNGC 1 cut(s) 217
BstENI CCTNNNNNAGG 1 cut(s) 158
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 343
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 2 cut(s) 135, 268
BsuRI GGCC 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 308
CpoI CGGWCCG 1 cut(s) 308
Csp6I GTAC 1 cut(s) 28
CspI CGGWCCG 1 cut(s) 308
CviAII CATG 2 cut(s) 216, 364
CviJI RGCY 6 cut(s) 54, 164, 170, 224, 302, 322
CviKI_1 RGCY 6 cut(s) 54, 164, 170, 224, 302, 322
CviQI GTAC 1 cut(s) 28
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 219, 367
FaiI YATR 5 cut(s) 93, 95, 217, 365, 374
FatI CATG 2 cut(s) 215, 363
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 3 cut(s) 155, 266, 287
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 311
Hin1II CATG 2 cut(s) 219, 367
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 3 cut(s) 73, 83, 140
HpaII CCGG 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 58, 173, 287
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 3 cut(s) 90, 136, 336
HpyCH4V TGCA 5 cut(s) 106, 116, 132, 236, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
Hsp92II CATG 2 cut(s) 219, 367
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 5 cut(s) 43, 54, 324, 328, 355
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 223
MaeI CTAG 3 cut(s) 155, 266, 287
MaeIII GTNAC 2 cut(s) 38, 84
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 2 cut(s) 135, 273
MlyI GAGTC 2 cut(s) 92, 149
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 2 cut(s) 6, 269
MseI TTAA 1 cut(s) 318
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 343
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 1 cut(s) 175
NlaIII CATG 2 cut(s) 219, 367
NmuCI GTSAC 1 cut(s) 84
NspI RCATGY 1 cut(s) 219
PaeI GCATGC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 2 cut(s) 91, 148
PpsI GAGTC 2 cut(s) 91, 148
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspPI GGNCC 1 cut(s) 308
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
Rsr2I CGGWCCG 1 cut(s) 308
RsrII CGGWCCG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 2 cut(s) 92, 149
ScrFI CCNGG 1 cut(s) 343
SetI ASST 7 cut(s) 17, 56, 172, 226, 285, 324, 347
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 308
SphI GCATGC 1 cut(s) 219
SsiI CCGC 1 cut(s) 258
SspMI CTAG 3 cut(s) 155, 266, 287
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 3 cut(s) 90, 136, 336
TaqII GACCGA 1 cut(s) 296
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 308
XagI CCTNNNNNAGG 1 cut(s) 158
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 1 cut(s) 219
XspI CTAG 3 cut(s) 155, 266, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.