Rh1BG063500

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0026528
Physical Location & Seq
Reverse (-)
9474613 .. 9476165
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG063500.1

Sequence Viewer

Length: 708 bp
ATGAGCACCGAAGATGACTTCTTCAATAACAGTGTCAAAGATTTCAATTCCGTATTCAAAACGGCTGTTGTTGCTTCTGTTGTTTCTTCTGTGGTGATGATCATTGCTGTTACAGCCATTGTATATGCCATTATTAACTGCTTGAAAAGTTATGGAAATCCTATTGCAAAATATGCCCGGGTAACAAGTAATAACGATACCGACAACGATTCCAACAACGTAGAAGCGGACTTCAGATGTGATCAATTTCCAGTTGCTCTTGATTCCCAGGCTGAGTTTCCGACAATCAAAGAGTTCCTTAGCAACATGGCAAGAGAGAAGCCTTTAACTTACTCAGCAAAGCAAATTGCAGAATTCACACATGACTATAGCCACTCCAACATTTTAGGTTCAGCACTATTATTGCGCTGTGGGATCGAGGAGAGAGACAGGGGAAAAGCTGAGAGGATGTTACTGGTAGCTTTGTGGTGCATTCAGCATTCACCAGAAGCGAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAGAGAAATTACTCCACCGCCTTGCCCCTTTGAACATTTGCAATCTCCGCAACTAAATTTCAGTCAAAATAGTGGAACAGATGACGACACTTGTACTTCTGCATCAGGCACACTCACTGATCCACGCCGCATTTTAAGTGCTGCGCCTGAAATTGAGCTCATTGTTGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

235

Amino Acids

26.02

Weight (kDa)

4.85

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026528)

Species Orthologous Gene IDs
rosa_samantha Rh1BG063500 Rh1CG076300 Rh1DG083400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 227, 551, 581, 661
AclWI GGATC 2 cut(s) 422, 647
AcsI RAATTY 2 cut(s) 353, 589
AcuI CTGAAG 1 cut(s) 217
AfaI GTAC 1 cut(s) 628
AgsI TTSAA 5 cut(s) 25, 46, 58, 145, 566
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 3 cut(s) 440, 461, 691
AluI AGCT 3 cut(s) 440, 461, 691
Alw21I GWGCWC 2 cut(s) 8, 693
Alw26I GTCTC 2 cut(s) 420, 487
AlwI GGATC 2 cut(s) 422, 647
Ama87I CYCGRG 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 2 cut(s) 353, 589
AspLEI GCGC 2 cut(s) 408, 679
AsuC2I CCSGG 2 cut(s) 178, 179
AsuHPI GGTGA 2 cut(s) 106, 474
AvaI CYCGRG 1 cut(s) 177
BanII GRGCYC 1 cut(s) 693
Bbv12I GWGCWC 2 cut(s) 8, 693
BbvI GCAGC 1 cut(s) 661
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 269
BclI TGATCA 2 cut(s) 99, 241
BcnI CCSGG 2 cut(s) 178, 179
BcoDI GTCTC 2 cut(s) 420, 487
BfmI CTRYAG 1 cut(s) 367
BisI GCNGC 2 cut(s) 661, 675
BlsI GCNGC 2 cut(s) 662, 676
Bme1390I CCNGG 3 cut(s) 178, 179, 269
BmeT110I CYCGRG 1 cut(s) 177
BmrFI CCNGG 3 cut(s) 178, 179, 269
BmsI GCATC 1 cut(s) 644
Bpu10I CCTNAGC 1 cut(s) 299
BpuMI CCSGG 2 cut(s) 178, 179
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 177, 267
Bse1I ACTGG 2 cut(s) 251, 459
Bse3DI GCAATG 2 cut(s) 102, 514
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 177, 267
BseGI GGATG 1 cut(s) 453
BseMI GCAATG 2 cut(s) 102, 514
BseMII CTCAG 3 cut(s) 264, 348, 432
BseNI ACTGG 2 cut(s) 251, 459
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 661
BsiHKAI GWGCWC 2 cut(s) 8, 693
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 420, 487
BsmI GAATGC 2 cut(s) 471, 478
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 8, 693
Bsp143I GATC 4 cut(s) 99, 241, 414, 652
BspACI CCGC 4 cut(s) 227, 551, 581, 661
BspCNI CTCAG 3 cut(s) 265, 347, 433
BspHI TCATGA 1 cut(s) 501
BspPI GGATC 2 cut(s) 422, 647
BspTNI GGTCTC 1 cut(s) 487
BsrDI GCAATG 2 cut(s) 102, 514
BsrI ACTGG 2 cut(s) 251, 459
BssECI CCNNGG 2 cut(s) 177, 267
BssMI GATC 4 cut(s) 99, 241, 414, 652
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 173
BstDEI CTNAG 4 cut(s) 273, 299, 334, 441
BstF5I GGATG 1 cut(s) 453
BstHHI GCGC 2 cut(s) 408, 679
BstKTI GATC 4 cut(s) 102, 244, 417, 655
BstMAI GTCTC 2 cut(s) 420, 487
BstMBI GATC 4 cut(s) 99, 241, 414, 652
BstMWI GCNNNNNNNGC 4 cut(s) 71, 113, 173, 580
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 176, 177, 267
BstSFI CTRYAG 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 661
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 37, 648
CciI TCATGA 1 cut(s) 501
CfoI GCGC 2 cut(s) 408, 679
Cfr9I CCCGGG 1 cut(s) 177
Csp6I GTAC 1 cut(s) 627
CviAII CATG 3 cut(s) 307, 362, 502
CviJI RGCY 8 cut(s) 65, 116, 272, 322, 372, 440, 461, 691
CviKI_1 RGCY 8 cut(s) 65, 116, 272, 322, 372, 440, 461, 691
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 4 cut(s) 273, 299, 334, 441
DpnI GATC 4 cut(s) 101, 243, 416, 654
DpnII GATC 4 cut(s) 99, 241, 414, 652
Ecl136II GAGCTC 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 693
Eco31I GGTCTC 1 cut(s) 487
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 691
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 693
FaeI CATG 3 cut(s) 310, 365, 505
FaiI YATR 9 cut(s) 124, 126, 153, 174, 308, 363, 369, 503, 534
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 3 cut(s) 306, 361, 501
FbaI TGATCA 2 cut(s) 99, 241
Fnu4HI GCNGC 2 cut(s) 661, 675
FokI GGATG 1 cut(s) 460
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 2 cut(s) 661, 675
GlaI GCGC 2 cut(s) 407, 678
GluI GCNGC 2 cut(s) 661, 675
HapII CCGG 1 cut(s) 178
HhaI GCGC 2 cut(s) 408, 679
Hin1II CATG 3 cut(s) 310, 365, 505
Hin6I GCGC 2 cut(s) 406, 677
HinP1I GCGC 2 cut(s) 406, 677
HinfI GANTC 2 cut(s) 209, 263
HpaII CCGG 1 cut(s) 178
HphI GGTGA 2 cut(s) 106, 474
Hpy188I TCNGA 2 cut(s) 236, 282
Hpy188III TCNNGA 2 cut(s) 260, 502
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 7 cut(s) 167, 350, 471, 517, 574, 635, 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 113, 173, 580
HpyF3I CTNAG 4 cut(s) 273, 299, 334, 441
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 3 cut(s) 310, 365, 505
HspAI GCGC 2 cut(s) 406, 677
Ksp22I TGATCA 2 cut(s) 99, 241
Kzo9I GATC 4 cut(s) 99, 241, 414, 652
LpnPI CCDG 9 cut(s) 191, 254, 264, 281, 415, 440, 498, 624, 693
Lsp1109I GCAGC 1 cut(s) 661
LweI GCATC 1 cut(s) 644
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 3 cut(s) 109, 181, 450
MalI GATC 4 cut(s) 101, 243, 416, 654
MboI GATC 4 cut(s) 99, 241, 414, 652
MboII GAAGA 3 cut(s) 13, 23, 78
MhlI GDGCHC 2 cut(s) 8, 693
MluCI AATT 7 cut(s) 46, 245, 345, 353, 540, 589, 684
MmeI TCCRAC 4 cut(s) 237, 305, 402, 504
MnlI CCTC 4 cut(s) 412, 438, 507, 520
MseI TTAA 3 cut(s) 135, 326, 668
MslI CAYNNNNRTG 1 cut(s) 698
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 3 cut(s) 178, 179, 269
Mva1269I GAATGC 2 cut(s) 471, 478
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 4 cut(s) 71, 113, 173, 580
NciI CCSGG 2 cut(s) 178, 179
NdeII GATC 4 cut(s) 99, 241, 414, 652
NlaIII CATG 3 cut(s) 310, 365, 505
PagI TCATGA 1 cut(s) 501
PctI GAATGC 2 cut(s) 471, 478
PfeI GAWTC 2 cut(s) 209, 263
PkrI GCNGC 2 cut(s) 662, 676
Psp124BI GAGCTC 1 cut(s) 693
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 1 cut(s) 698
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 3 cut(s) 135, 326, 668
SatI GCNGC 2 cut(s) 661, 675
Sau3AI GATC 4 cut(s) 99, 241, 414, 652
ScrFI CCNGG 3 cut(s) 178, 179, 269
SduI GDGCHC 2 cut(s) 8, 693
SetI ASST 6 cut(s) 222, 391, 442, 463, 499, 693
SfaNI GCATC 1 cut(s) 644
SfcI CTRYAG 1 cut(s) 367
SmaI CCCGGG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 698
Sse9I AATT 7 cut(s) 46, 245, 345, 353, 540, 589, 684
SsiI CCGC 4 cut(s) 227, 551, 581, 661
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 176, 177, 267
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 417
TasI AATT 7 cut(s) 46, 245, 345, 353, 540, 589, 684
TatI WGTACW 1 cut(s) 626
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 2 cut(s) 209, 263
Tru1I TTAA 3 cut(s) 135, 326, 668
Tru9I TTAA 3 cut(s) 135, 326, 668
TscAI CASTG 2 cut(s) 37, 655
TseI GCWGC 1 cut(s) 674
TspGWI ACGGA 1 cut(s) 40
TspMI CCCGGG 1 cut(s) 177
TspRI CASTG 2 cut(s) 37, 655
XapI RAATTY 2 cut(s) 353, 589
XmaI CCCGGG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.