Rh1CG076300

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0026528
Physical Location & Seq
Reverse (-)
15904006 .. 15909263
5258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG076300.1

Sequence Viewer

Length: 861 bp
ATGACTGTGCACCTGTCCGAGGCTGGCAGCTGGGTCTTACTTGCAGGGGAAGAAAACTCCACCAAGAACAAACTTTTCGTTTTAAGGGAATCTTTGCAGAGGGGTCCTGTCCCCGCCCAGGGACCTAGTCCGGTCCCCAACGTCCCTGGTCCTAGGAGTCCTGCCTATCCTGCAATCAACGGGGCCGTCCCTTGTGCTAGGAGTCCAGCCCATCCTGCAATCAACGGGGCCGTTGCTGCTTTTGTTATTTCTACTGTGGTGCTGATCATTGCTGTTACAGCCATTATATGTGTCATTATTAACTGCGTGAAAAAGTCTGGAAGTTCTATTCCAATTTCTGCCAAGATAATGAGTAGTAACAATACCGACAACGATTCCAACAACAAAGTAGCAGTGGACTTGAGACATGATCAATTTCCAGTAGCTTTTGATTCCCAGGCTGAGTTTCCAACAATCAAGGGGTTTCTAAGAAACATGGCAAGGGAGAAGCCTATAACTTACTCAGCAAAGCAAATTGCAGAATTCACACATAACTATAGCTACTCTAATATATTAGCACTATTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGGACAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCAAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTGCACAACTGAATTTCAGTCAAAATAGTGGAACAGATGACGACACTAGTACTTTGGCATCAGCCACAATGATTGATCCACACCCTAGTGTGGCACATGAAATTGAGCTAGTTGTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

286

Amino Acids

30.97

Weight (kDa)

5.99

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026528)

Species Orthologous Gene IDs
rosa_samantha Rh1BG063500 Rh1CG076300 Rh1DG083400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AclWI GGATC 2 cut(s) 584, 809
AcsI RAATTY 2 cut(s) 521, 751
AfaI GTAC 1 cut(s) 790
AfiI CCNNNNNNNGG 4 cut(s) 19, 118, 119, 829
AgsI TTSAA 1 cut(s) 728
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 3 cut(s) 117, 145, 435
AleI CACNNNNGTG 1 cut(s) 825
AluBI AGCT 5 cut(s) 30, 425, 540, 623, 847
AluI AGCT 5 cut(s) 30, 425, 540, 623, 847
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 2 cut(s) 397, 582
Alw44I GTGCAC 1 cut(s) 8
AlwI GGATC 2 cut(s) 584, 809
AoxI GGCC 2 cut(s) 183, 228
ApaLI GTGCAC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 27, 236
ApoI RAATTY 2 cut(s) 521, 751
AspA2I CCTAGG 1 cut(s) 152
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 6 cut(s) 104, 122, 133, 149, 183, 228
AsuHPI GGTGA 1 cut(s) 636
AvaII GGWCC 4 cut(s) 104, 122, 133, 149
AvrII CCTAGG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 39, 223
BccI CCATC 1 cut(s) 219
BceAI ACGGC 2 cut(s) 170, 215
BciT130I CCWGG 3 cut(s) 119, 147, 437
BclI TGATCA 2 cut(s) 264, 409
BcoDI GTCTC 2 cut(s) 397, 582
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 6 cut(s) 126, 153, 198, 786, 825, 848
BfmI CTRYAG 1 cut(s) 535
BisI GCNGC 2 cut(s) 28, 237
BlnI CCTAGG 1 cut(s) 152
BlsI GCNGC 2 cut(s) 29, 238
BmcAI AGTACT 1 cut(s) 790
Bme1390I CCNGG 3 cut(s) 119, 147, 437
Bme18I GGWCC 4 cut(s) 104, 122, 133, 149
BmgT120I GGNCC 6 cut(s) 104, 122, 133, 149, 183, 228
BmiI GGNNCC 5 cut(s) 105, 123, 135, 184, 229
BmrFI CCNGG 3 cut(s) 119, 147, 437
BmsI GCATC 1 cut(s) 806
BpuEI CTTGAG 1 cut(s) 421
BsaJI CCNNGG 6 cut(s) 18, 117, 118, 145, 152, 435
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 118, 119, 829
Bse1I ACTGG 1 cut(s) 419
Bse3DI GCAATG 2 cut(s) 267, 676
BseBI CCWGG 3 cut(s) 119, 147, 437
BseDI CCNNGG 6 cut(s) 18, 117, 118, 145, 152, 435
BseGI GGATG 2 cut(s) 211, 615
BseLI CCNNNNNNNGG 4 cut(s) 19, 118, 119, 829
BseMI GCAATG 2 cut(s) 267, 676
BseMII CTCAG 2 cut(s) 432, 516
BseNI ACTGG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 2 cut(s) 39, 223
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 726
BshFI GGCC 2 cut(s) 185, 230
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 6 cut(s) 95, 119, 128, 135, 173, 609
BslI CCNNNNNNNGG 4 cut(s) 19, 118, 119, 829
BsmAI GTCTC 2 cut(s) 397, 582
BsmFI GGGAC 6 cut(s) 95, 119, 128, 135, 173, 609
BsmI GAATGC 2 cut(s) 633, 640
BsnI GGCC 2 cut(s) 185, 230
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 4 cut(s) 264, 409, 576, 814
BspACI CCGC 1 cut(s) 114
BspANI GGCC 2 cut(s) 185, 230
BspCNI CTCAG 2 cut(s) 433, 515
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 5 cut(s) 105, 123, 135, 184, 229
BspPI GGATC 2 cut(s) 584, 809
BsrDI GCAATG 2 cut(s) 267, 676
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 6 cut(s) 18, 117, 118, 145, 152, 435
BssMI GATC 4 cut(s) 264, 409, 576, 814
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 3 cut(s) 119, 147, 437
Bst4CI ACNGT 2 cut(s) 7, 256
Bst6I CTCTTC 1 cut(s) 576
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 441, 467, 502
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 211, 615
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 4 cut(s) 267, 412, 579, 817
BstMAI GTCTC 2 cut(s) 397, 582
BstMBI GATC 4 cut(s) 264, 409, 576, 814
BstMWI GCNNNNNNNGC 4 cut(s) 170, 215, 236, 278
BstNI CCWGG 3 cut(s) 119, 147, 437
BstSCI CCNGG 3 cut(s) 117, 145, 435
BstSFI CTRYAG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 39, 223
BsuRI GGCC 2 cut(s) 185, 230
BtsCI GGATG 2 cut(s) 211, 615
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 25
CciI TCATGA 1 cut(s) 663
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 6 cut(s) 104, 122, 133, 149, 183, 228
Csp6I GTAC 1 cut(s) 789
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
CviAII CATG 4 cut(s) 407, 475, 664, 836
CviQI GTAC 1 cut(s) 789
DdeI CTNAG 3 cut(s) 441, 467, 502
DpnI GATC 4 cut(s) 266, 411, 578, 816
DpnII GATC 4 cut(s) 264, 409, 576, 814
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 152
Eco47I GGWCC 4 cut(s) 104, 122, 133, 149
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 2 cut(s) 104, 122
EcoRI GAATTC 1 cut(s) 521
EcoRII CCWGG 3 cut(s) 117, 145, 435
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 4 cut(s) 410, 478, 667, 839
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 6 cut(s) 95, 119, 128, 135, 173, 609
FatI CATG 4 cut(s) 406, 474, 663, 835
FauI CCCGC 1 cut(s) 121
FbaI TGATCA 2 cut(s) 264, 409
Fnu4HI GCNGC 2 cut(s) 28, 237
FokI GGATG 2 cut(s) 198, 622
Fsp4HI GCNGC 2 cut(s) 28, 237
FspBI CTAG 6 cut(s) 126, 153, 198, 786, 825, 848
GlaI GCGC 1 cut(s) 569
GluI GCNGC 2 cut(s) 28, 237
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 2 cut(s) 185, 230
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 570
Hin1II CATG 4 cut(s) 410, 478, 667, 839
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 5 cut(s) 89, 157, 202, 374, 431
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 636
Hpy166II GTNNAC 2 cut(s) 10, 397
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 318, 664
Hpy8I GTNNAC 2 cut(s) 10, 397
HpyCH4III ACNGT 2 cut(s) 7, 256
HpyCH4IV ACGT 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 215, 236, 278
HpyF3I CTNAG 3 cut(s) 441, 467, 502
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 4 cut(s) 410, 478, 667, 839
HspAI GCGC 1 cut(s) 568
Ksp22I TGATCA 2 cut(s) 264, 409
Kzo9I GATC 4 cut(s) 264, 409, 576, 814
Lsp1109I GCAGC 2 cut(s) 39, 223
LweI GCATC 1 cut(s) 806
MaeI CTAG 6 cut(s) 126, 153, 198, 786, 825, 848
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 274, 356
MalI GATC 4 cut(s) 266, 411, 578, 816
MboI GATC 4 cut(s) 264, 409, 576, 814
MboII GAAGA 2 cut(s) 62, 593
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 7 cut(s) 333, 413, 513, 521, 702, 751, 840
MlyI GAGTC 2 cut(s) 166, 211
MmeI TCCRAC 3 cut(s) 402, 473, 666
MnlI CCTC 6 cut(s) 13, 93, 600, 669, 682, 723
MseI TTAA 3 cut(s) 83, 300, 614
MslI CAYNNNNRTG 1 cut(s) 825
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 3 cut(s) 119, 147, 437
Mva1269I GAATGC 2 cut(s) 633, 640
MvaI CCWGG 3 cut(s) 119, 147, 437
MwoI GCNNNNNNNGC 4 cut(s) 170, 215, 236, 278
NdeII GATC 4 cut(s) 264, 409, 576, 814
NlaIII CATG 4 cut(s) 410, 478, 667, 839
NlaIV GGNNCC 5 cut(s) 105, 123, 135, 184, 229
OliI CACNNNNGTG 1 cut(s) 825
PagI TCATGA 1 cut(s) 663
PasI CCCWGGG 1 cut(s) 118
PctI GAATGC 2 cut(s) 633, 640
PfeI GAWTC 3 cut(s) 89, 374, 431
PflFI GACNNNGTC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 29, 238
PleI GAGTC 2 cut(s) 165, 210
PpsI GAGTC 2 cut(s) 165, 210
PpuMI RGGWCCY 2 cut(s) 104, 122
Psp5II RGGWCCY 2 cut(s) 104, 122
Psp6I CCWGG 3 cut(s) 117, 145, 435
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 3 cut(s) 117, 145, 435
PspN4I GGNNCC 5 cut(s) 105, 123, 135, 184, 229
PspPI GGNCC 6 cut(s) 104, 122, 133, 149, 183, 228
PspPPI RGGWCCY 2 cut(s) 104, 122
PsyI GACNNNGTC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 790
RsaNI GTAC 1 cut(s) 789
RseI CAYNNNNRTG 1 cut(s) 825
SaqAI TTAA 3 cut(s) 83, 300, 614
SatI GCNGC 2 cut(s) 28, 237
Sau3AI GATC 4 cut(s) 264, 409, 576, 814
Sau96I GGNCC 6 cut(s) 104, 122, 133, 149, 183, 228
ScaI AGTACT 1 cut(s) 790
SchI GAGTC 2 cut(s) 166, 211
ScrFI CCNGG 3 cut(s) 119, 147, 437
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 1 cut(s) 806
SfcI CTRYAG 1 cut(s) 535
SinI GGWCC 4 cut(s) 104, 122, 133, 149
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
SpeI ACTAGT 1 cut(s) 785
Sse9I AATT 7 cut(s) 333, 413, 513, 521, 702, 751, 840
SsiI CCGC 1 cut(s) 114
SspMI CTAG 6 cut(s) 126, 153, 198, 786, 825, 848
StyD4I CCNGG 3 cut(s) 117, 145, 435
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 2 cut(s) 7, 256
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 579, 855
TasI AATT 7 cut(s) 333, 413, 513, 521, 702, 751, 840
TatI WGTACW 1 cut(s) 788
TfiI GAWTC 3 cut(s) 89, 374, 431
Tru1I TTAA 3 cut(s) 83, 300, 614
Tru9I TTAA 3 cut(s) 83, 300, 614
TscAI CASTG 1 cut(s) 399
TseI GCWGC 2 cut(s) 27, 236
TspDTI ATGAA 1 cut(s) 852
TspRI CASTG 1 cut(s) 399
Tth111I GACNNNGTC 1 cut(s) 126
VneI GTGCAC 1 cut(s) 8
VpaK11BI GGWCC 4 cut(s) 104, 122, 133, 149
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 2 cut(s) 521, 751
XmaJI CCTAGG 1 cut(s) 152
XspI CTAG 6 cut(s) 126, 153, 198, 786, 825, 848
ZrmI AGTACT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.