Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0032251

Physical Location & Seq

Genomic Coordinates Forward (+)

20089757 .. 20100441

Gene Structure 10685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG117600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCCGAGGGTGATAGTCACCGACGAAGGAATGGAGTGCAGTGTATGCTTGGAAAGCTTCAAAGTCTGCGGTGAAGCCAAGAAGATGCCTTACCAAAACAAGCCATGCCCTTTTTGTGTTGGAGCCACAGTTGTACCTGACCCGCTTGTTTCTTCCATGTCTGCCCCTCTTCCCCCACCAAGCTTCTCACCCACTTCCCCAATTGCTTCATCAATGGCTTCCTTCTCTCCAGGAATTCAACAAGGAAGTGAAGGAAATCAAATGGATTCGCATAAGAAACCGCTCATTGCCCTCATTGTGACTTGTGCAACACTTGGTGCAGTTTTGTTGTCACTATTGTGTTTGTGGTTTTATCACAGCAAGTACAAGTTCCTTAAGAGAAATGCTCAGAGCTCAGATGCCGAGAAGGAGCTGGCATTGTCTCCATTTTTCGGTAAATTCAATTCCATAAAGATGGTTGGAAACAAAGGGTCTGTGACAGTAATTGAGTATAAGCTAATAGAAAAGGGCACTAGCAATTTTCGGGAGAGTAATATCTTGGGCGAGGGTGGATTTGGATGCGTTTATCGGGCTCATTTGGATGATAGTTTGATTGTTGCTGTCAAGAAACTGGACTGTGCAACTGAGGATGCTGAAAAAGAATTTGAGATTAAGAAACAAGGAATATACAAGGGTGCTAATTTTGTAATTGTCTCTTTGACTGGATGGGGTGCACTTATCTTTAGTGGATACAAGTTTTTCACCGGAGGCAAAGGCAAGAAGGAAGAGGATGATGGGGACCAATTCGTTTATGGTTCTGAGCTGGGTGCTATTCCCCGTAGCCAGTTATCTGTTGGTTATTTTGTCTTTCGTATGAAAGAAGTAATAAGTGAGTACATACTTTGGTGTAGCAGGGCTTTCCGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

302

Amino Acids

33.04

Weight (kDa)

8.24

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032251)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0021900
rosa_samantha	Rh1BG117600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	283
AciI	CCGC	3 cut(s)	69, 143, 281
AcsI	RAATTY	3 cut(s)	234, 437, 641
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	3 cut(s)	135, 365, 875
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	61, 239, 442
AjnI	CCWGG	1 cut(s)	229
AleI	CACNNNNGTG	1 cut(s)	337
AluBI	AGCT	6 cut(s)	57, 183, 393, 412, 496, 802
AluI	AGCT	6 cut(s)	57, 183, 393, 412, 496, 802
Alw21I	GWGCWC	2 cut(s)	395, 715
Alw26I	GTCTC	2 cut(s)	426, 697
Alw44I	GTGCAC	1 cut(s)	711
ApaLI	GTGCAC	1 cut(s)	711
ApoI	RAATTY	3 cut(s)	234, 437, 641
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	5 cut(s)	10, 22, 83, 180, 733
AvaII	GGWCC	1 cut(s)	778
BaeGI	GKGCMC	2 cut(s)	512, 715
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BanII	GRGCYC	2 cut(s)	395, 574
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
Bbv12I	GWGCWC	2 cut(s)	395, 715
BccI	CCATC	3 cut(s)	448, 699, 767
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	722
BcoDI	GTCTC	2 cut(s)	426, 697
BfaI	CTAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	722
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	2 cut(s)	124, 779
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	4 cut(s)	75, 388, 548, 619
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
BpmI	CTGGAG	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	5, 901
BsaWI	WCCGGW	1 cut(s)	743
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	3 cut(s)	615, 706, 823
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	5, 901
BseGI	GGATG	5 cut(s)	563, 586, 634, 710, 775
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	4 cut(s)	401, 408, 615, 789
BseNI	ACTGG	3 cut(s)	615, 706, 823
BseSI	GKGCMC	2 cut(s)	512, 715
BseYI	CCCAGC	1 cut(s)	802
BsgI	GTGCAG	2 cut(s)	58, 339
BsiHKAI	GWGCWC	2 cut(s)	395, 715
BsiSI	CCGG	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	426, 697
BsmFI	GGGAC	1 cut(s)	791
Bsp1286I	GDGCHC	4 cut(s)	395, 512, 574, 715
BspACI	CCGC	3 cut(s)	69, 143, 281
BspCNI	CTCAG	4 cut(s)	400, 407, 616, 790
BspLI	GGNNCC	2 cut(s)	124, 779
BspTI	CTTAAG	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	615, 706, 823
BssECI	CCNNGG	2 cut(s)	5, 901
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	130, 481, 617
Bst6I	CTCTTC	2 cut(s)	174, 759
BstAFI	CTTAAG	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	4 cut(s)	387, 394, 624, 798
BstF5I	GGATG	5 cut(s)	563, 586, 634, 710, 775
BstMAI	GTCTC	2 cut(s)	426, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 54
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSLI	GKGCMC	2 cut(s)	512, 715
BstXI	CCANNNNNNTGG	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	722
BtsCI	GGATG	5 cut(s)	563, 586, 634, 710, 775
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	778
Csp6I	GTAC	3 cut(s)	134, 364, 874
CviAII	CATG	2 cut(s)	105, 157
CviQI	GTAC	3 cut(s)	134, 364, 874
DdeI	CTNAG	4 cut(s)	387, 394, 624, 798
DraIII	CACNNNGTG	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	174, 759
EarI	CTCTTC	2 cut(s)	174, 759
Ecl136II	GAGCTC	1 cut(s)	393
Eco24I	GRGCYC	2 cut(s)	395, 574
Eco47I	GGWCC	1 cut(s)	778
Eco53kI	GAGCTC	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	229
EcoT38I	GRGCYC	2 cut(s)	395, 574
FaeI	CATG	2 cut(s)	108, 160
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	2 cut(s)	104, 156
FauI	CCCGC	1 cut(s)	150
FokI	GGATG	5 cut(s)	570, 593, 641, 717, 782
FriOI	GRGCYC	2 cut(s)	395, 574
FspBI	CTAG	1 cut(s)	513
GsaI	CCCAGC	1 cut(s)	806
GsuI	CTGGAG	1 cut(s)	213
HapII	CCGG	1 cut(s)	744
Hin1II	CATG	2 cut(s)	108, 160
HindIII	AAGCTT	2 cut(s)	55, 181
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	5 cut(s)	10, 22, 83, 180, 733
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	4 cut(s)	390, 397, 799, 902
Hpy188III	TCNNGA	2 cut(s)	524, 604
Hpy8I	GTNNAC	1 cut(s)	713
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	5 cut(s)	20, 232, 245, 400, 754
HpyCH4III	ACNGT	3 cut(s)	130, 481, 617
HpyCH4V	TGCA	5 cut(s)	39, 308, 320, 620, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 54
HpyF3I	CTNAG	4 cut(s)	387, 394, 624, 798
Hsp92II	CATG	2 cut(s)	108, 160
LmnI	GCTCC	2 cut(s)	122, 409
LweI	GCATC	4 cut(s)	75, 388, 548, 619
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	4 cut(s)	16, 298, 330, 475
MbiI	CCGCTC	1 cut(s)	283
MboII	GAAGA	4 cut(s)	94, 144, 161, 776
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	4 cut(s)	395, 512, 574, 715
MmeI	TCCRAC	2 cut(s)	100, 439
MnlI	CCTC	7 cut(s)	177, 302, 538, 619, 740, 760, 896
MseI	TTAA	2 cut(s)	375, 651
MslI	CAYNNNNRTG	3 cut(s)	337, 452, 579
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	45, 54
NlaIII	CATG	2 cut(s)	108, 160
NlaIV	GGNNCC	2 cut(s)	124, 779
NmeAIII	GCCGAG	2 cut(s)	30, 427
NmuCI	GTSAC	4 cut(s)	16, 298, 330, 475
OliI	CACNNNNGTG	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	124, 779
PspPI	GGNCC	1 cut(s)	778
RsaI	GTAC	3 cut(s)	135, 365, 875
RsaNI	GTAC	3 cut(s)	134, 364, 874
RseI	CAYNNNNRTG	3 cut(s)	337, 452, 579
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	375, 651
Sau96I	GGNCC	1 cut(s)	778
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	4 cut(s)	395, 512, 574, 715
SetI	ASST	7 cut(s)	59, 139, 185, 395, 414, 498, 804
SfaNI	GCATC	4 cut(s)	75, 388, 548, 619
SinI	GGWCC	1 cut(s)	778
SmiMI	CAYNNNNRTG	3 cut(s)	337, 452, 579
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SsiI	CCGC	3 cut(s)	69, 143, 281
SspMI	CTAG	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	3 cut(s)	130, 481, 617
TatI	WGTACW	2 cut(s)	363, 873
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	375, 651
Tru9I	TTAA	2 cut(s)	375, 651
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	4 cut(s)	16, 298, 330, 475
Tsp45I	GTSAC	4 cut(s)	16, 298, 330, 475
TspDTI	ATGAA	2 cut(s)	198, 869
TspRI	CASTG	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	374
VneI	GTGCAC	1 cut(s)	711
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	3 cut(s)	234, 437, 641
XcmI	CCANNNNNNNNNTGG	2 cut(s)	788, 830
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.