Rh1BG244900

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0029324
Physical Location & Seq
Reverse (-)
37146201 .. 37150728
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG244900.1

Sequence Viewer

Length: 426 bp
ATGGGGCATTCATCAGCAGTCTGGGACTATAAGGCAGCAATTGAGAAAACAAAGGACTTGAATGGGGTCGGACAAGTTGTTCTTCGAAACCCACAAGGGGGTTCAGCGCAGGTTAGCTTGCATGGAGGACAGGTCACATCATGGAGGAATGAGCATGGAGAAGAACTCCTATTCACTAGTAGTAAGGCAATCTTCAAGCCTCCAAAAGCAATGCGAGGGGGAATTCCCATTTGTTTCCCACAGTTTGGGAATTGTGGATCTTTAGAACTACATGGTTTTGCAAGAAACAAGCTCTGGGCAATTGATGATAATCCTCCAGTGCTTCGCCCAAATGATTCCCAAGGAAAATCATTTGTTGATCTCCTTCTTAAACCATCTGAAGAGGACCTGAAGTTCTGGCCCCATAGGTATGAGCTTGGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

141

Amino Acids

15.6

Weight (kDa)

7.76

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 25 - 139 4.2e-25 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029324)

Species Orthologous Gene IDs
pyrus_communis pycom07g14240
rosa_samantha Rh1BG244900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 245
AclWI GGATC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 2 cut(s) 399, 410
AfiI CCNNNNNNNGG 3 cut(s) 97, 98, 245
AgsI TTSAA 2 cut(s) 61, 196
AhlI ACTAGT 1 cut(s) 176
AloI GAACNNNNNNTCC 4 cut(s) 63, 95, 377, 409
AluBI AGCT 3 cut(s) 117, 292, 415
AluI AGCT 3 cut(s) 117, 292, 415
AlwI GGATC 1 cut(s) 265
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 222
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 2 cut(s) 385, 399
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 382
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 385, 399
BmiI GGNNCC 1 cut(s) 401
BmsI GCATC 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 98, 245
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 3 cut(s) 97, 98, 245
BseMI GCAATG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 400
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 97, 98, 245
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 257, 358
BspANI GGCC 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 401
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 265
BspT104I TTCGAA 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 2 cut(s) 257, 358
BssT1I CCWWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 260, 361
BstMBI GATC 2 cut(s) 257, 358
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 385, 399
CviAII CATG 4 cut(s) 122, 141, 155, 272
CviJI RGCY 5 cut(s) 117, 199, 292, 400, 415
CviKI_1 RGCY 5 cut(s) 117, 199, 292, 400, 415
DpnI GATC 2 cut(s) 259, 360
DpnII GATC 2 cut(s) 257, 358
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 399, 410
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 4 cut(s) 125, 144, 158, 275
FaiI YATR 7 cut(s) 30, 123, 142, 156, 273, 405, 411
FalI AAGNNNNNCTT 4 cut(s) 66, 98, 176, 208
FaqI GGGAC 1 cut(s) 38
FatI CATG 4 cut(s) 121, 140, 154, 271
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 400
HhaI GCGC 1 cut(s) 109
Hin1II CATG 4 cut(s) 125, 144, 158, 275
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 1 cut(s) 335
Hpy188I TCNGA 2 cut(s) 71, 379
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 121, 281
Hsp92II CATG 4 cut(s) 125, 144, 158, 275
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 2 cut(s) 257, 358
LpnPI CCDG 7 cut(s) 7, 95, 116, 280, 330, 382, 401
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 410
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 259, 360
MboI GATC 2 cut(s) 257, 358
MboII GAAGA 4 cut(s) 74, 173, 184, 392
MfeI CAATTG 2 cut(s) 39, 300
MflI RGATCY 1 cut(s) 257
MluCI AATT 4 cut(s) 39, 222, 250, 300
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 6 cut(s) 119, 138, 209, 210, 324, 376
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 408
MunI CAATTG 2 cut(s) 39, 300
Mva1269I GAATGC 1 cut(s) 7
NdeII GATC 2 cut(s) 257, 358
NlaIII CATG 4 cut(s) 125, 144, 158, 275
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 1 cut(s) 133
NspV TTCGAA 1 cut(s) 85
PctI GAATGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 2 cut(s) 385, 399
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 257, 358
Sau96I GGNCC 2 cut(s) 385, 399
SetI ASST 7 cut(s) 114, 119, 135, 294, 390, 410, 417
SfaNI GCATC 1 cut(s) 410
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 408
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 4 cut(s) 39, 222, 250, 300
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 85
TasI AATT 4 cut(s) 39, 222, 250, 300
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 222
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.