Rh1CG157300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0034283
Physical Location & Seq
Reverse (-)
34760877 .. 34761307
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG157300.1

Sequence Viewer

Length: 357 bp
ATGGTCCTCAGACACTTGGATGATAGGATGTTAGCGGAGGAGAACTTGCCCCGGATCTTGGTGTGCGAAGACGAGGCTATGAAGGAGACACTTAAGCGTAGCAGATTTGGGCTCGAGCTCGTGCTTGCTTTGCTGGAGGCAGAGCAATTGGGTTTGGCGGCGCAGGGGAGAAGAAGGGCCGTGCTAGGCTGTATGGGAGAACGAACAAGGTCAAGGCGAAGAATGGGAAAGAGAAGGTTTGAAGTTGGTTGCTCCTGGTCTAGTTTCTACATTGTCGCATATTCTATATTGGATGTCATGCATGTTGTTAAGCACCACAATTTCGTGTGTTGGCGAGACAAAGTTTTTCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.82

Weight (kDa)

9.55

Isoelectric Point (pI)

74.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034283)

Species Orthologous Gene IDs
rosa_samantha Rh1CG157300 Rh6CG197500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 35, 158
AclWI GGATC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 58
AflII CTTAAG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 80, 330
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 2 cut(s) 4, 177
AsuC2I CCSGG 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 114, 120
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 120
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 256
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 80, 330
BfaI CTAG 2 cut(s) 185, 261
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 52, 256
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 4, 177
BmrFI CCNGG 2 cut(s) 52, 256
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 3 cut(s) 25, 33, 298
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 53
BshFI GGCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 80, 330
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 114, 120
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 2 cut(s) 35, 158
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 21
BspPI GGATC 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 1 cut(s) 54
BssSI CACGAG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 256
BstAFI CTTAAG 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 3 cut(s) 25, 33, 298
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 80, 330
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 50, 254
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 3 cut(s) 25, 33, 298
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 4, 177
CviAII CATG 2 cut(s) 298, 302
CviJI RGCY 5 cut(s) 77, 112, 118, 179, 189
CviKI_1 RGCY 5 cut(s) 77, 112, 118, 179, 189
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 2 cut(s) 114, 120
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 303
EcoT38I GRGCYC 2 cut(s) 114, 120
FaeI CATG 2 cut(s) 301, 305
FaiI YATR 7 cut(s) 80, 194, 280, 287, 299, 303, 355
FatI CATG 2 cut(s) 297, 301
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 3 cut(s) 32, 40, 305
FriOI GRGCYC 2 cut(s) 114, 120
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 2 cut(s) 185, 261
GlaI GCGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 52
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 301, 305
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HpaII CCGG 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 76, 168, 228
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 301, 305
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 5 cut(s) 65, 119, 149, 241, 268
MaeI CTAG 2 cut(s) 185, 261
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 3 cut(s) 80, 183, 231
MfeI CAATTG 1 cut(s) 146
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 2 cut(s) 114, 120
MluCI AATT 2 cut(s) 146, 319
MnlI CCTC 4 cut(s) 17, 31, 67, 130
Mph1103I ATGCAT 1 cut(s) 303
MseI TTAA 2 cut(s) 93, 309
MslI CAYNNNNRTG 1 cut(s) 18
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 52, 256
MunI CAATTG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 52
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 301, 305
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 113
PkrI GCNGC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspPI GGNCC 2 cut(s) 4, 177
PspXI VCTCGAGB 1 cut(s) 113
PsuI RGATCY 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 93, 309
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 2 cut(s) 4, 177
ScrFI CCNGG 2 cut(s) 52, 256
SduI GDGCHC 2 cut(s) 114, 120
SetI ASST 3 cut(s) 120, 212, 239
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 92, 113
SmoI CTYRAG 2 cut(s) 92, 113
Sse9I AATT 2 cut(s) 146, 319
SsiI CCGC 2 cut(s) 35, 158
SspMI CTAG 2 cut(s) 185, 261
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 50, 254
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 146, 319
TauI GCSGC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 93, 309
Tru9I TTAA 2 cut(s) 93, 309
TspDTI ATGAA 1 cut(s) 95
Vha464I CTTAAG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 2 cut(s) 185, 261
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.