Rh6CG197500

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0034283
Physical Location & Seq
Reverse (-)
32874813 .. 32879044
4232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG197500.1

Sequence Viewer

Length: 495 bp
ATGGTGATCCTCAAACAGCTGGAGGATCGAGTTTTGGTGGCTGAGGATTTGCCGCGCATCACTAGCGTGTTGCGGAGCAGAGACGAGGATATTGAGGAGACAACGAAAAGTAGTCATTTCAGGCTAGAAATTGTTCCAACATCTTTAGAGGTAGAAAACTTGGGTTTGATTGTGCATGAGAATGATCTGGTAGAGGATTACGAGCCAAGGGAGGATGGGAAACTACATCACTTACGCCATGACTCTGCTTTAGAAATCAAATCTACAAATGATACAAGCAGAGACCAACCGACGGCTACTGCAGTGTCTAACTCAAGCACTAGTAACACAGAAAGTAATGCATCCACTTCAAAATTTGAAGAGGAACTTAAAGTTGCTTCAAGGTTGCGAAAATTTGCTTTTAACGATATTAAATTGGCAACAAGAAATTTCAGACCTAAAAGTCTTCTTGGTGAAGGTGGTTTTGGTTGTGTGTTCAAGGGGTGGATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.56

Weight (kDa)

5.21

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034283)

Species Orthologous Gene IDs
rosa_samantha Rh1CG157300 Rh6CG197500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 441
AccII CGCG 1 cut(s) 55
AciI CCGC 2 cut(s) 53, 73
AclWI GGATC 1 cut(s) 33
AcsI RAATTY 3 cut(s) 353, 392, 427
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 4 cut(s) 351, 359, 381, 478
AhlI ACTAGT 1 cut(s) 320
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AleI CACNNNNGTG 1 cut(s) 65
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 3 cut(s) 75, 92, 276
AlwI GGATC 1 cut(s) 33
ApoI RAATTY 3 cut(s) 353, 392, 427
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 16, 464
BbsI GAAGAC 1 cut(s) 437
BbvCI CCTCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 209, 481
BceAI ACGGC 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 75, 92, 276
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 3 cut(s) 63, 125, 321
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmsI GCATC 2 cut(s) 66, 350
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 3 cut(s) 220, 341, 492
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 3 cut(s) 75, 92, 276
BsmBI CGTCTC 1 cut(s) 75
Bso31I GGTCTC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 6, 25, 184
BspACI CCGC 2 cut(s) 53, 73
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 3 cut(s) 6, 25, 184
BssT1I CCWWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 3 cut(s) 220, 341, 492
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 9, 28, 187
BstMAI GTCTC 3 cut(s) 75, 92, 276
BstMBI GATC 3 cut(s) 6, 25, 184
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 437
BtsCI GGATG 3 cut(s) 220, 341, 492
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
CfoI GCGC 1 cut(s) 57
CviAII CATG 2 cut(s) 176, 239
CviJI RGCY 5 cut(s) 19, 41, 124, 205, 296
CviKI_1 RGCY 5 cut(s) 19, 41, 124, 205, 296
DdeI CTNAG 1 cut(s) 42
DpnI GATC 3 cut(s) 8, 27, 186
DpnII GATC 3 cut(s) 6, 25, 184
DrdI GACNNNNNNGTC 1 cut(s) 441
DseDI GACNNNNNNGTC 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 206
EcoT22I ATGCAT 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 206
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 2 cut(s) 179, 242
FaiI YATR 2 cut(s) 177, 240
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 2 cut(s) 175, 238
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 2 cut(s) 227, 328
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 3 cut(s) 63, 125, 321
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 41
HhaI GCGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 179, 242
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 242
HphI GGTGA 2 cut(s) 16, 464
Hpy188I TCNGA 1 cut(s) 434
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 449
HpyCH4V TGCA 3 cut(s) 175, 302, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 2 cut(s) 179, 242
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 6, 25, 184
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 5, 106, 173
LweI GCATC 2 cut(s) 66, 350
MaeI CTAG 3 cut(s) 63, 125, 321
MaeIII GTNAC 1 cut(s) 323
MalI GATC 3 cut(s) 8, 27, 186
MboI GATC 3 cut(s) 6, 25, 184
MboII GAAGA 2 cut(s) 371, 437
MluCI AATT 5 cut(s) 129, 353, 392, 413, 427
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 9 cut(s) 16, 20, 37, 79, 88, 142, 187, 205, 355
Mph1103I ATGCAT 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 3 cut(s) 369, 402, 411
MslI CAYNNNNRTG 2 cut(s) 65, 180
MspA1I CMGCKG 1 cut(s) 19
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 3 cut(s) 6, 25, 184
NlaIII CATG 2 cut(s) 179, 242
NsiI ATGCAT 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 19
RseI CAYNNNNRTG 2 cut(s) 65, 180
SaqAI TTAA 3 cut(s) 369, 402, 411
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 3 cut(s) 6, 25, 184
SchI GAGTC 1 cut(s) 236
SetI ASST 5 cut(s) 21, 153, 386, 439, 460
SfaNI GCATC 2 cut(s) 66, 350
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 65, 180
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 5 cut(s) 129, 353, 392, 413, 427
SsiI CCGC 2 cut(s) 53, 73
SspMI CTAG 3 cut(s) 63, 125, 321
StyI CCWWGG 1 cut(s) 206
TaqI TCGA 1 cut(s) 28
TasI AATT 5 cut(s) 129, 353, 392, 413, 427
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 369, 402, 411
Tru9I TTAA 3 cut(s) 369, 402, 411
TscAI CASTG 1 cut(s) 309
TspRI CASTG 1 cut(s) 309
XapI RAATTY 3 cut(s) 353, 392, 427
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 3 cut(s) 63, 125, 321
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.