Rh1CG165500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0019333
Physical Location & Seq
Forward (+)
36439197 .. 36443539
4343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG165500.1

Sequence Viewer

Length: 333 bp
ATGCTGACCTTGATCTCACCCACAATGTTTCTCGGTGCCAGTAGAAGTACCTTATTGGAATCAAGTCTTCAGGGACCCAAGATCGATGGGCACTGGTGGTGGATATTGGAAGGGATGGTCAAGCATGCTGATGTTTGGGCTAAAGACCTAGGTCTTAGTAATGTTGCCCTGACCATTCTTCAGGAGAAAGCTTCATACGAGACGGGTCTTACAAAAGCCTTTAGTAGAGTCCATTGTGAACAATTAAGTTCGAAGCATCCAGGGGAATTACTGCAATCATTCCAAGTTTCATTGAGTACATCAAGCAACTTAGATGCTTATGCAGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.15

Weight (kDa)

5.71

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019333)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0340371
rosa_roxburghii Rroxscaffold_4G00311230
rosa_samantha Rh1AG178400 Rh1BG145700 Rh1BG146800 Rh1CG165500 Rh1DG177700 Rh6BG086600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AcuI CTGAAG 2 cut(s) 53, 164
AfaI GTAC 2 cut(s) 49, 298
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 194
AspA2I CCTAGG 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 9
AsuII TTCGAA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 59
BccI CCATC 2 cut(s) 80, 109
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 149
BlnI CCTAGG 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 3 cut(s) 37, 75, 76
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 265, 304
BoxI GACNNNNGTC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 148, 260
Bse1I ACTGG 2 cut(s) 39, 98
BseBI CCWGG 1 cut(s) 261
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 148, 260
BseGI GGATG 2 cut(s) 120, 256
BseNI ACTGG 2 cut(s) 39, 98
BseSI GKGCMC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 84
BslFI GGGAC 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 194
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 12, 81
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 37, 75, 76
BspT104I TTCGAA 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 35
BsrI ACTGG 2 cut(s) 39, 98
BssECI CCNNGG 2 cut(s) 148, 260
BssMI GATC 2 cut(s) 12, 81
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 155, 310
BstF5I GGATG 2 cut(s) 120, 256
BstKTI GATC 2 cut(s) 15, 84
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 2 cut(s) 12, 81
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 128
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 259
BstSLI GKGCMC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 59
Bsu15I ATCGAT 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 2 cut(s) 120, 256
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 74
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 2 cut(s) 48, 297
CviAII CATG 1 cut(s) 125
CviJI RGCY 3 cut(s) 140, 191, 218
CviKI_1 RGCY 3 cut(s) 140, 191, 218
CviQI GTAC 2 cut(s) 48, 297
DdeI CTNAG 2 cut(s) 155, 310
DpnI GATC 2 cut(s) 14, 83
DpnII GATC 2 cut(s) 12, 81
Eco130I CCWWGG 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 2 cut(s) 53, 164
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 1 cut(s) 128
FaiI YATR 3 cut(s) 126, 196, 321
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 124
FokI GGATG 2 cut(s) 127, 243
FspBI CTAG 1 cut(s) 149
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 2 cut(s) 59, 228
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 239
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 274, 323
HpyF3I CTNAG 2 cut(s) 155, 310
Hsp92II CATG 1 cut(s) 128
KflI GGGWCCC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 12, 81
LpnPI CCDG 7 cut(s) 52, 56, 79, 167, 182, 246, 273
LweI GCATC 2 cut(s) 265, 304
MaeI CTAG 1 cut(s) 149
MalI GATC 2 cut(s) 14, 83
MboI GATC 2 cut(s) 12, 81
MboII GAAGA 2 cut(s) 59, 170
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 242, 266, 328
MlyI GAGTC 1 cut(s) 237
MseI TTAA 2 cut(s) 245, 331
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
NdeII GATC 2 cut(s) 12, 81
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 3 cut(s) 37, 75, 76
NspI RCATGY 1 cut(s) 128
NspV TTCGAA 1 cut(s) 251
PaeI GCATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 59
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 37, 75, 76
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
RsaI GTAC 2 cut(s) 49, 298
RsaNI GTAC 2 cut(s) 48, 297
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 2 cut(s) 245, 331
Sau3AI GATC 2 cut(s) 12, 81
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 93
SetI ASST 5 cut(s) 11, 53, 150, 154, 193
SfaNI GCATC 2 cut(s) 265, 304
SfuI TTCGAA 1 cut(s) 251
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 129
SphI GCATGC 1 cut(s) 128
Sse9I AATT 3 cut(s) 242, 266, 328
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 148
TaqI TCGA 2 cut(s) 84, 251
TasI AATT 3 cut(s) 242, 266, 328
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 245, 331
Tru9I TTAA 2 cut(s) 245, 331
TscAI CASTG 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 183, 279
TspRI CASTG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 74
XceI RCATGY 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 148
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.